week 4 14

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Issues

https://github.com/yvancouver/Workflow/issues

My issues

https://github.com/genevar/amg/issues/assigned/yvancouver?direction=desc&sort=updated&state=open

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From Last Week

New

• Start doing analysis on excap19

• Should adapt the fingerprinting test script to the new file format

    Sample_Diag-excap19-SampleID-GenePackage-KIT
  

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Comments

• 20 Jan. 2014

  • Meeting day at Beate.

• 21 Jan. 2014

  • Copied excap19 on condor and start mapping for the first four samples.

• 22 Jan. 2014

  • check mapping for the first four samples.
  • start the four next.

• 23 Jan. 2014

  • Start redo analysis with new GATK on PCD samples
  • load the four last on condor

• 24 Jan. 2014

  • Start new analysis with the last 12 samples?
  • check the condor jobs
  • Redo the fingerprinting test on the new pipeline (gatkUG281) ** Watch not to overwrite the old report.. **