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Rewrite fingerprinting script
yvancouver edited this page Mar 20, 2014
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3 revisions
again ....
now
python MergeResults.py -vcf snp.raw.snpFingerPrintingTest.vcf -defi snpQC.V1.tab
It should be
python MergeResults.py -ID 13000641231
Algorithm:
the first script MergeResults get an sampleID and the current directory.
Ying
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runGroupPipeline.pl condor/Project/groupProfile.txt
In the groupProfile.txt, every line contains sampleID condor/profileFile.txt
in profileFile.txt
runName=131009_7001448_0224_BC2G61ACXX project=Project_Diag-excap17-2013-09-18Redo SampleID=Sample_Diag-excap17-1000-KIT-AI50bv5 captureKit=a5 -
first script calls variantCallingPipeline.pl
This is completely outdated!
Need to rewrite this article