Incremental building of phylogenetic distance tree
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Updated
Jul 18, 2024 - C++
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Incremental building of phylogenetic distance tree
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Estimate metagenomic coverage and sequence diversity
Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.
UGENE is free open-source cross-platform bioinformatics software
BLAST without Sys.Call()
🔬 Assemble large genomes using short reads
Repository containing the source code for PII project course at Politecnico di Milano.
Efficient variant-call data storage and retrieval library using the TileDB storage library.
The software package SiteGA for de novo motif search in ChIP-seq data
Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
Pangenome Mutation-Annotated Networks
SortMeRNA: next-generation sequence filtering and alignment tool
Versatile open-source tool for microbiome analysis
🌿: ABM & GIS for philological, archaeological, and anthropological data.
Protein structure alignment and search algorithm
Fulgor is a fast and space-efficient colored de Bruijn graph index.
Sequence Indexing and Search
RNAelem is a tool for learning secondary structural motifs from a set of RNA sequences.
A compressed, associative, exact, and weighted dictionary for k-mers.