Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
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Updated
May 30, 2024 - Python
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
Scripts to download genomes from the NCBI FTP servers
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Library for Digital Pathology Image Processing
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A Python Library for Conway's Game of Life
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Comparative Genomics Toolkit 3
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Race and ethnicity Imputation from Disease history with Deep LEarning
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Blender plugin to process biological data and molecular work.
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