tools for working with genome variation graphs
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Updated
Jun 3, 2024 - C++
tools for working with genome variation graphs
Python and C++ code for reading and writing genomics data.
UGENE is free open-source cross-platform bioinformatics software
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
BioC++ core library (alphabet, meta, ranges)
High-performance stochastic modeling of DNA loop extrusion interactions
Biotechnology protocols improved with Artificial Intelligence for the MIT biotechnology tournament iGem 2019. Check out our website!
A simple yet powerful sequence clustering tool.
PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.
DNAdrive is a science project which makes data storage in bacteria possible. Given binary data, it constructs DNA sequences (aka packets) which can be used as protospacers in CRISPR-based systems, such as the one found in Escherichia Coli. 🔬
LCS is an algorithm to find the Longest Common Subsequence between two Strings.
Translate nucleotides (DNA & RNA) to aminoacid using IUPAC ambiguity codes
Starklag - a partial evolution simulator
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