Python and R Scripts for Statistical analysis of available immunogobulin variable genes

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

NCBI BLAST+ wrapper for WashU MGI cluster

CPgeneProfiler R package repository

A phylogenetics web app

Async BLAST+ query service and supporting libraries.

Small project to use NCBI and RDP websites for Sequence alignments using Selenium for Python

Does multiple nucleotidic | aminoacidic BLAST queries in the NCBI BLAST web from a given multiFASTA and writes the output with the results. The queries are parallelized using Threads.

I developed the "National Centre for Biotechnology Information" project to create a comprehensive and user-friendly platform for accessing and exploring a wealth of biotechnological information. Utilizing HTML, CSS, and Bootstrap, I designed a responsive web application that ensures seamless accessibility across various devices and screen sizes.

Blast Query Builder, part of the PhyloclassTalk software for Pharo Smalltalk

This tiny piece of program helps you transferring NCBI Blast result to spreadsheet. You just need to download the Blast result in a single JSON file.

Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.

Automating NCBI BLAST requests from FASTQ/FASTA/GENBANK files to format into a readable file, graph representation and more!

Interactive Visual Output and Functional Predictions visualisations for Job Dispatcher tool outputs

The official Seqs-Extractor Repository

This is the repository for the Assignments of Practical Bioinformatics Course

Parse binary files from Cblaster into more useful information (tree, table, pie chart)

This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.

Guia de programas e ferramentas de bioinformática e química computacional

Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.