Efficient target prediction incorporating accessibility of interaction sites
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Updated
May 3, 2024 - C++
Efficient target prediction incorporating accessibility of interaction sites
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
A tool for de novo clustering of long transcriptomic reads
Parallel solution for local RNA secondary structure analysis
RNAnue
PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.
RNA Interaction Format (RIF) with reference implementations in C++, JavaScript, and Python
LaRA 2: Lagrangian Relaxed structural Alignment
Translate nucleotides (DNA & RNA) to aminoacid using IUPAC ambiguity codes
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding
MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding
A C++ software interface to RNA module databases, and a biobjective algorithm to include known modules in sequences to assist the energy criteria in predicting secondary structures.
A project to sequence the RNA from actual error prone reads from a PCR process and then to analyze the sequenced protein sequence
HiPR: High-throughput Probabilistic inference of RNA structure
Code for systematically classify data in SRA according to all the taxa present in the reads (SRA-metagenome)
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