Identification of differential RNA modifications from nanopore direct RNA sequencing
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Updated
Apr 29, 2024 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
nucleic acid folding
RiboNucleic Acid (RNA) Language Model
Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.
RNAcentral website source code
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
Pipeline for de novo clustering of long transcriptomic reads
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy
AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.
Deep learning to solve RNA design puzzles
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
RNA Fusion Detection and Quantification
Python implementation of the FR3D software for searching and annotating RNA 3D structures
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
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