Toolbox for molecular animations in Blender, powered by Geometry Nodes.

A comprehensive library for computational molecular biology

A dependency-free cross-platform swiss army knife for PDB files.

An all-atom protein structure dataset for machine learning.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

A Python framework for structural systems biology

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

RiboNucleic Acid (RNA) Language Model

Control PyMOL sessions via IPython

Set of useful HADDOCK utility scripts

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

PACKMAN: PACKing and Motion ANalysis

Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).

mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data

PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.

Intelligent System for Analysis, Model Building And Rational Design of biomolecules.