Repository navigation
Home
dickgroenenberg edited this page Feb 1, 2023
·
51 revisions
| 2to3 | convert python2 scripts to py3 |
| Activate user | correct user account activation issue |
| Ansible tool menu | edit tool menu with Ansible install |
| Backup Repositories | clone .git and .wiki repos |
| Blast dbs | update issues and xml differences Production and Test |
| Blast db genbank | nt is downloaded as db not fas |
| Blast mapping | correct mapping issue db4 vs 5 |
| Checkout release | upgrade or downgrade Galaxy |
| Conda envs | 'conda envs' inside versus outside Galaxy |
| Cron jobs | set up cron in Galaxy |
| Filemerge and opendiff | compare or merge files |
| Galaxy training | tutorials and instruction vids GTN |
| Git stuff | some notes on git |
| Internal service error | file upload not working |
| Install Tools | envs created with .xml versus .yml |
| Make Otu Table | formatting peculiarities |
| Merge Reads Flash | basename requirements |
| Merge Reads error | incomplete read-pairs |
| Multi to Singleline fas | convert multiline fasta files to singleline |
| Out of Space | clean Galaxy's temporary database |
| Restart Galaxy | show status or restart Galaxy Ansible |
| Rmate | use TextMate to edit remote files |
| Rsync and Checksum | copy BLASTdatabases between instances |
| Set locale | fix missing locale error |
| StdOut | show standard output in Galaxy GUI |
| String in files | search string and return files in path recursively |
| Tool menu | add, remove, order, rename tools in tool menu |
| User statistics | obtain sorted Galaxy database User statistics (using PSQL) |
| User statistics 2 | user statistics and quota |
| User statistics COMMpare | compare sorted mail lists |
| Workflows | automate Galaxy; improves repeatability and facilitates testing |
Galaxy notes:
- 2to3
- Activate user
- Backup Repositories
- Blast dbs
- Blast db genbank
- Blast mapping
- Checkout release
- Conda envs
- Cron jobs
- Filemerge and opendiff
- Install Tools
- Galaxy training
- Git stuff
- Make Otu Table
- Merge Reads Flash
- Multi to Singleline fas
- Out of Space
- Restart Galaxy
- Rmate
- Set Locale
- Stdout
- Tool menu
- User statistics
- User statistics 2
- User statistics COMMpare
- Workflows