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dickgroenenberg edited this page Feb 1, 2023 · 51 revisions

Galaxy notes:

2to3 convert python2 scripts to py3
Activate user correct user account activation issue
Ansible tool menu edit tool menu with Ansible install
Backup Repositories clone .git and .wiki repos
Blast dbs update issues and xml differences Production and Test
Blast db genbank nt is downloaded as db not fas
Blast mapping correct mapping issue db4 vs 5
Checkout release upgrade or downgrade Galaxy
Conda envs 'conda envs' inside versus outside Galaxy
Cron jobs set up cron in Galaxy
Filemerge and opendiff compare or merge files
Galaxy training tutorials and instruction vids GTN
Git stuff some notes on git
Internal service error file upload not working
Install Tools envs created with .xml versus .yml
Make Otu Table formatting peculiarities
Merge Reads Flash basename requirements
Merge Reads error incomplete read-pairs
Multi to Singleline fas convert multiline fasta files to singleline
Out of Space clean Galaxy's temporary database
Restart Galaxy show status or restart Galaxy Ansible
Rmate use TextMate to edit remote files
Rsync and Checksum copy BLASTdatabases between instances
Set locale fix missing locale error
StdOut show standard output in Galaxy GUI
String in files search string and return files in path recursively
Tool menu add, remove, order, rename tools in tool menu
User statistics obtain sorted Galaxy database User statistics (using PSQL)
User statistics 2 user statistics and quota
User statistics COMMpare compare sorted mail lists
Workflows automate Galaxy; improves repeatability and facilitates testing

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