Accurate sample inference from amplicon data with single nucleotide resolution

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

A repository for setting up a RNAseq workflow

R toolkit for the analysis of single-cell chromatin data

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Simple simulation of single-cell RNA sequencing data

A collection of scripts and notes related to genomics and bioinformatics

R package for the analysis of massive SNP arrays.

R package for analyzing single-cell RNA-seq data

chromatin Variability Across Regions (of the genome!)

Helper Functions for Interactive Tree Of Life (iTOL)

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

Base Classes and Functions for Mass Spectrometry and Proteomics

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

Make TCGA download and prepare easy!

Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package