A versatile pairwise aligner for genomic and spliced nucleotide sequences
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Updated
Oct 13, 2024 - C
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Toolkit for processing sequences in FASTA/Q formats
MMseqs2: ultra fast and sensitive search and clustering suite
Foldseek enables fast and sensitive comparisons of large structure sets.
Remote protein homology detection suite.
Sequence-to-graph mapper and graph generator
Align proteins to genomes with splicing and frameshift
🔬 BEDOPS: high-performance genomic feature operations
GenomeTools genome analysis system.
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Finds SNP sites from a multi-FASTA alignment file
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Next generation sequencing reads de novo assembler.
UCSC Genome Browser source tree. Stable branch: "beta".