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2D Processing

Michael T. Judge edited this page Mar 1, 2021 · 9 revisions

Getting 2D spectra into Matlab from pre-processed data files (usually from NMRPipe?), then running basic processing and visualization steps:

Load the 2D data into Matlab: Load2D

Visualize the 2D data before conversion: vis2D

If spectra need to be referenced/calibrated: ref_spectra2D

Convert to a matrix, unify the ppm vectors (interpolates data; this takes a while): Setup2D

Visualization (after conversion to matrix): stackplot

Pre-alignment segmentation (optional): segment2D

2D Alignment: HATS, star_align2D

Ref: basic 2D processing workflow from Steve Robinette

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