guide_align1D

guide_align1D

Calculates guided alignment using hierarchical clustering and an alignment method of your choice - default is PAFFT

Graphical representation?

Known bugs:

21JAN2019: FT had a problem with it: Error in SegLength=round(SegLength_range(spectra_distance)). 21JAN2019: MJ also had problems before that with guide_align1D.

25FEB2019: 'ICOSHIFT' produced an error.

Typical next steps: normalization

Tags: Alignment star_align1D CCOW PARCCOW PAFFT RAFFT

References:

Robinette, Steven L., Ramadan Ajredini, Hasan Rasheed, Abdulrahman Zeinomar, Frank C. Schroeder, Aaron T. Dossey, and Arthur S. Edison. 2011. “Hierarchical Alignment and Full Resolution Pattern Recognition of 2D Nmr Spectra: Application to Nematode Chemical Ecology.” Analytical Chemistry 83 (5): 1649–57. https://doi.org/10.1021/ac102724x.