v3.7.1

CI

• Remove unused workflow by @caic99 #4512
• build docs only for main repo by @caic99 #4306

Fix

• Move Vxc output from after_scf to after_all_runners by @maki49 #4497
• Remove the dependency of write_dmr on globalV::NLOCAL by @pxlxingliang #4500
• Fix no STRU_ION_1 file output by @hongriTianqi #4506
• Fix init_Table_Spherical_Bessel with correct k & r mesh multiple by @jinzx10 #4516
• Fix the bug which SCF restart for unconverged cases by @WHUweiqingzhou #4538
• Fix compile failure of main.cpp by @Qianruipku #4638
• Fix MKL scalapack linking by @caic99 #4644
• Fix DeePKS MD/Relax/Cell-relax calculation convergence by @dyzheng #4575
• Fix oneAPI runtime error when build with libtorch by @caic99 #4613
• Fix esolver.cpp by @pxlxingliang #4612
• Fix misunderstanding absolute path as annotation by @Qianruipku #4629
• Fix missing head of running.log by @Qianruipku #4630
• Fix the memory problem in berryphase by @pxlxingliang #4631
• Fix wrong running_*.log by @Qianruipku #4648
• Fix MKL finding problem in pyabacus by @maki49 #4656
• Fix some minor security risks with ModuleESolver::init_esolver() by @PeizeLin #4590
• Fix some minor security risks with ModuleIO::read_wfc_nao by @PeizeLin #4558
• Address the atomicAdd error by @denghuilu #4234
• Fix cusolver error under multi-k situation by @dzzz2001 #4278
• Fix makefile cannot compile tests in module_pw by @Qianruipku #4270
• Fix orb_matrix file is not safely written/renamed by @kirk0830 #4299
• Fix the bug in dav gpu code and add more integrate test for GPU by @haozhihan #4265

Refactor

• Remove pdiagh pointer and redundant code by @Cstandardlib #4520
• Change nkstot_ibz and kvec_d_ibz from members into local variables by @maki49 #4515
• Remove some variables from LCAO_Matrix class by @WHUweiqingzhou #4519
• Remove BasedOnStyle: Microsoft from clang-format by @haozhihan #4522
• Remove the useless loc in veff by @pxlxingliang #4532
• Removal of ORB_table_phi by @jinzx10 #4503
• Remove check_structure() from UnitCell by @sunliang98 #4499
• Remove some members from LCAO_Matrix class by @WHUweiqingzhou #4546
• Replace the interface of out_dm by using DensityMatrix.DMK instead of loc.DM by @pxlxingliang #4509
• Remove initDiagh function in hsolver by @Cstandardlib #4527
• Fully refactored original obsolete lapack hsolver by @Critsium-xy #4581
• Separate Class diag_comm_info and Class const_nums by @haozhihan #4582
• Remove additional dependencies of parallel_reduce.h by @haozhihan #4585
• Remove Hloc, Hloc2, Sloc, Sloc2 in LCAO_Matrix by @dyzheng #4574
• Remove some variables from LCAO_Matrix class by @WHUweiqingzhou #4568
• Remove the useless variables and functions in unkOverlap_lcao by @pxlxingliang #4569
• Remove redundant Local_Orbital_Charge in class Veff and DeepKS by @PeizeLin #4572
• Use alicloud image sync by @caic99 #4567
• Fix the wrong type of ibz2bz by @maki49 #4577
• Login to use alicloud image sync by @caic99 #4573
• Fix get_S failed when smearing_method is gauss by @hongriTianqi #4571
• Correct the warning message about ntype by @pxlxingliang #4562
• Split the function into different functionalities by @A-006 #4566
• Remove module_device additional dependencies by @haozhihan #4579

• update version to 3.7.1 by @dyzheng in #4662

Full Changelog: v3.7.0...v3.7.1

v3.7.0

What's Changed

Feature

• Feature: add the output of energy for all esolver types in abacus.json by @pxlxingliang in #4413
• Feature: add command line option --check-input to check input only by @hongriTianqi in #4424
• Feature: support nupdown = 0.0 calculation by @hongriTianqi in #4425
• Feature: add function get_nbasis in class HContainer by @pxlxingliang in #4447
• Add INPUT parameter bands_to_print for get_wf calculation by @AsTonyshment in #4466

Fix

• Fix: BLACS lib in unit test by @jinzx10 in #4338
• Fix: report error when fr-uspp used in linear calculations by @YuLiu98 in #4348
• Fix: address memory leak with single precision by @denghuilu in #4492
• Fix: correct the dimension of wfc_k_grid for allocating memory in istate_envelope function by @kirk0830 in #4494
• fix the output format in aveElecStatPot.py by @xdzhu in #4367
• Fix: support cross-boundary structures in orbital generation by @jinzx10 in #4376
• Fix: matrix bug in uspp by @YuLiu98 in #4397
• Fix: no inversion symmetry, reset symmetry of SOC calculation to -1 by @dyzheng in #4375
• Fix: improve the precision according to issue#4183 by @kirk0830 in #4460
• Fix: remove the warning_quit when there are more than 50 basis of one atom by @kirk0830 in #4461
• Fix: correct function read_abacus_lowf by @kirk0830 in #4433
• fix: fix the incorrect usage of macro #elif by @pxlxingliang in #4478
• Fix: bug in mulliken output by @hongriTianqi in #4463

Test

• Test: fix clang-format settings by @haozhihan in #4382
• Test: compare the relative difference for Onsager.txt by @Qianruipku in #4378
• test: update the path of SR.csr in examples/matrix_hs/out_s_multik/run.sh by @pxlxingliang in #4352
• Test: use origin python in test.yml to support numpy by @dyzheng in #4383
• Test: accelerate integrate tests by @YuLiu98 in #4358
• Test: fix precommit failure by @caic99 in #4426
• test: support reading threshold from file 'threshold' in integrate test by @pxlxingliang in #4450
• CI: modify clang-tidy setting by @haozhihan in #4488
• CI: enable clang-tidy in CI by pre-commit-config by @haozhihan in #4384
• CI: add clang-tidy readability-braces-around-statements setting by @haozhihan in #4390

Perf

• Perf: Optimize hsolver GPU code (useful information of GPU optimization: __syncwarp() should be used instead of __syncthreads()) by @OldDriver233 in #4295
• Perf: remove unnecessary sync for cuda ops by @caic99 in #4361
• Perf: reduce data transmission in the GPU code of module_gint by @dzzz2001 in #4356
• Perf: use less memory and optimize performance to calculate force and stress in pw base by @dyzheng in #4047

Docs

• doc: correct the typo in input-main.md by @pxlxingliang in #4423
• Docs: add docs for --version and --check-input by @hongriTianqi in #4428

Refactor

• Refactor: redesign the constructor and member variables of davsubspace class by @haozhihan in #4330
• Update before_all_runners in ESolver by @mohanchen in #4334
• Add and Remove some functions in klist.h etc by @Haerxile in #4257
• Update write_potential and "others" function in ESolver by @mohanchen in #4336
• Update the 'calculation' description in the documents and fix a small bug in elecstate_energy.cpp, update set_force and set_stress in LCAO_matrix by @mohanchen in #4340
• refactor: separate the print_psi from wfc_2d_to_grid and remove the invalid call by @pxlxingliang in #4268
• refactor: remove the usused LOC in getForceStress by @pxlxingliang in #4343
• Modify the average electrostatic potential script （Useful Information：How to plot electrostatic potential） by @xdzhu in #4350
• Refactor: replace cudamalloc and cudafree with cuda_mem_wrapper by @dzzz2001 in #4347
• Refactor: Remove DiagoIterAssist dependencies in DiagoDavid by @Cstandardlib in #4346
• CI: add pre-commit.ci to apply clang-format and clang-tidy fixes by @caic99 in #4225
• Using the standard CUDA <<<...>>> syntax to avoid compilation errors. by @LiuXiaohui123321 in #4362
• Refactor: add alternatives to functions LOWF::gamma_file and LOWF::allocate_k by @kirk0830 in #4331
• Refactor: change R_index in class AtomPair to type ModuleBase::vector3<int> by @DylanWRh in #4243
• Refactor: remove Kubo-Greenwood and DOS functions from esolver by @Qianruipku in #4355
• Add header file when using memset() function to avoid compi… by @LiuXiaohui123321 in #4380
• Refactor: replace pointer to Diago_DavSubspace with object by @Cstandardlib in #4386
• Refactor: delete some useless files in module_psi/kernel/ folder by @haozhihan in #4391
• bug: warning_quit when reading WFC file failed. by @pxlxingliang in #4388
• Refactor istate_charge.cpp using new DensityMatrix class by @AsTonyshment in #4392
• Refactor: remove unused class Output_Interface by @hongriTianqi in #4394
• Update LCAO_matrix and related functions and delete LCAO_gen_fixedH by @mohanchen in #4400
• Add several warning quits in DensityMatrix and Gint when parameters are not initialized by @AsTonyshment in #4389
• delete 31 double arrays in LCAO_matrix, add a new class named force_stress_arrays.h used in force and stress calcualtions by @mohanchen in #4407
• Refactor: Initial removal of Hamilt from diag_once func in Davsubspace by @haozhihan in #4398
• Refactor: Mulliken output codes with more flexible io interfaces by @hongriTianqi in #4359
• Refactor: extracted transpose parameter checking routine of gemm/v by @OldDriver233 in #4279
• Adding comments and modifying properties in the PW module by @DoctorDra in #4405
• Refactor: remove useless function from wavefunc by @Qianruipku in #4408
• Refactor: move snap_psibeta_half_tddft to module_tddft by @jinzx10 in #4414
• Refactor: Initial removal of psi::Psi<T, Device> from Diago_DavSubspace by @haozhihan in #4416
• Use Vector to replace new and delete in gint，spilt gint_tools and change Makefile,remove ORB in gint by @A-006 in #4353
• Refactor: 1. change "enum calculation_type" to "enum class calculation_type" for safety by @PeizeLin in #4319
• Refactor: delete some variables of LCAO_Matrix by @WHUweiqingzhou in #4415
• refactor: output sparse DMR by Output_HContainer instead of output_dm1.h/cpp by @pxlxingliang in #4374
• Refactor: replace pointer to Diago classes with object by @Cstandardlib in #4409
• Build: disable build libm by default by @caic99 in https://github.com/deepmodeling/a...

v3.6.5

What's Changed

Feature

• Feature : set deepks_equiv as input variable by @wenfei-li in #4195
• Feature: Input and output vector potential in tddft calculation by @ESROAMER in #4173
• Feature: a better looking of SCF iteration information on screen by @kirk0830 in #4185
• Feature : printing initial charge density by @wenfei-li in #4254

Fix

• Fix: address the atomicAdd error by @denghuilu in #4234
• Fix: replace cal_stress in GPU relax calculation，use NUM_STREAM in INPUT file and fix memory leak in force calculation by @A-006 in #4200
• Fix: add one whitespaces between each column of scf stdout by @kirk0830 in #4252
• Fix: fix the bug in dav gpu code and add more integrate test for GPU by @haozhihan in #4265
• Fix: makefile cannot compile tests in module_pw by @Qianruipku in #4270
• Fix: fix cusolver error under multi-k situation by @dzzz2001 in #4278
• Fix: present orb_matrix file is not safely written/renamed by @kirk0830 in #4299

Perf

• Perf: split code_gen.cpp to reduce compilation time by @dzzz2001 in #4210
• Perf: optimize single-process performence of cusolver by @dzzz2001 in #4191
• Perf: optimize single-process performence of cusolver by @dzzz2001 in #4191
• Perf: Incorporate OpenMP in the force and rho computations on the GPU by @dzzz2001 in #4280
• Perf: optimize psir_dot function in gint_rho_gpu.cu by @dzzz2001 in #4326

Refactor

• Refactor: Remove unused function Gint_Gamma::vl_grid_to_2D and related variables by @DylanWRh in #4229
• Refactor: rename diago_blas to diago_scalapack by @haozhihan in #4233
• Refactor: Modify class BaseMatrix by @DylanWRh in #4239
• Refactor: remove all globalV in diago_david by @haozhihan in #4211
• Refactor: simplified Parallel_2d interface by @jinzx10 in #4237
• Refactor: Replace modify the functions form cu files to cpp files by @A-006 in #4245
• Refactor: Encapsulation of K_point modules by @jwsyzy in #4240
• Refactor LCAO force: merge gamma and k by @maki49 in #4263
• Refactor: Remove Unused chg_extrap = dm INPUT Parameter Code by @AsTonyshment in #4285
• Refactor: Remove redundant function and modify comments in the PW module by @yang2022i in #4271
• Refactor: eliminate most use of LOWF instance in esolver - step 1 by @kirk0830 in #4273
• Refactor Separate the coupled GPU task functions. by @A-006 in #4281
• Refactor: Improve the parallel part of the K-point module by @jwsyzy in #4289
• Refactor: delete GlobalV::CURRENT_SPIN in code by @dyzheng in #4301
• Refactor: removal of GlobalC::UOT by @jinzx10 in #4322

Test

• Test: Modify the input file of examples/interface_wannier90 to run the Wannier90 interface correctly. by @jingan-181 in #4236
• test: modify the script to read energy from running_wcf_xx.log in example/bsse by @pxlxingliang in #4259
• CI: build docs only for main repo by @caic99 in #4306

Doc

• Docs: Doxygen Documentation Deployment by @jinzx10 in #4264

Full Changelog: v3.6.4...v3.6.5

v3.6.4

What's Changed

Doc

• correct the description of angle1 and angle2 in stru.md by @pxlxingliang in #4213

Feature

• loading equivariant deepks model by @wenfei-li in #4137

Feature

• Add PEXSI Support for Gamma Only LCAO Calculation by @Flying-dragon-boxing in #3561
• compute module_gint by GPU by @dzzz2001 in #4109
• enable uspp in upf100 format by @YuLiu98 in #4151
• enhance PSI Constructor: Lower Peak Device Memory Usage by @denghuilu in #4154
• set OpenMP thread num to a proper default value by @caic99 in #3943

Fix

• add ModuleBase::timer::tick("Symmetry","analy_sys"); by @PeizeLin in #4221
• address single precision error of dcu by @denghuilu in #4201
• default and force set symmetry=0 with efield by @maki49 in #4209
• enable out_mat_r in nscf calculation by @dyzheng in #4084
• fix HR output in tddft by @ESROAMER in #4150
• fix add-Hexx condition and remove the redundant OperatorEXX in NSCF by @maki49 in #4186
• fix compiling failure in CI test by @Critsium-xy in #4198
• fix intel compiler warnings by @denghuilu in #4166
• fix wrong output of S(k) in TDDFT calculation by @AsTonyshment in #4148
• memory: modify hpsi interface in diagH_subspace_init func by @haozhihan in #4167
• recover the behavior of print_tau for ase interface by @kirk0830 in #4197
• revert "Test: supplementary use of Memory::record to record memory (#4129) by @dyzheng in #4189
• various matrix elements calculations in orbital generation by @jinzx10 in #3940
• wrong memory record in vkb by @dyzheng in #4206

Refactor

• SphericalBesselTransformer cleanup by @jinzx10 in #4152
• Update ESolver by @mohanchen in #4157
• clean up BLACS initialization in Parallel_2D by @jinzx10 in #4207
• more light-weighted formatter library by @kirk0830 in #4114
• optimize cast_memory_op by @denghuilu in #4160
• refactor psi::memory namespace and add module_device in module_base by @haozhihan in #4141
• remove template on relax_driver by @hongriTianqi in #4172
• replace GlobalC in module_gint by @A-006 in #4164

Test

• supplementary use of Memory::record to record memory by @Religious-J in #4129
• zdot_real_op (and some other math ops) benchmark on cpu by @Critsium-xy in #3840

New Contributors

• @Flying-dragon-boxing made their first contribution in #3561
• @Religious-J made their first contribution in #4129

Full Changelog: v3.6.3...v3.6.4

v3.6.3

What's Changed

Feature

• Feature : descriptors for equivariant DeePKS by @wenfei-li in #3894
• Feature : reading and writing of h(r) and dm(r) in npz format by @wenfei-li in #4066
• Feature: write local-XC and EXX part of band(orbital) energy along with the XC matrix by @maki49 in #4013
• Feature: add device error check for functions within device.cpp by @denghuilu in #4106
• Improve output of H and S matrices: output matrices when the self-consistent iteration steps reach scf_nmax, even if the charge density doesn't converge. by @LiuXiaohui123321 in #4147

Docs

• Docs: add docs about parameter symmetry by @WHUweiqingzhou in #4073
• Docs: remove extra ``` by @caic99 in #4133
• Docs: delay release of deltaspin due to bugs by @hongriTianqi in #4146

Fix

• Fix: use std::abs() instead of abs() by @WHUweiqingzhou in #4076
• Add a warning quit when parameters do not match in read_wfc_nao.cpp by @AsTonyshment in #4087
• Fix: remove non-used pointer in Gint by @maki49 in #4009
• Fix: dcu cmake compilation error by @denghuilu in #4097
• Fix: add some hint about error by @WHUweiqingzhou in #4100
• Fix: solve the convergence problem of E value in dav_subspace method by @haozhihan in #4052
• Fix: bug of plot-tools for nspin=2 and shift=True case by @1041176461 in #4116
• Fix: No warning is given if KPT is ill set by @Luc1anoo in #4134

Refactor

• Refactor istate_charge.cpp to reduce dependence on other modules by @AsTonyshment in #4086
• Refactor: optimized cubic spline by @jinzx10 in #4081
• Replace “lm->paraV” with “paraV” to simpifier parameters by @A-006 in #4110

Build & Test

• Test: increase the time limit of CI test by @WHUweiqingzhou in #4098
• fix: pin the version of intel mpi to 2021.11 by @pxlxingliang in #4105
• CI: modify CUDA test by @dzzz2001 in #4083
• Build: pin Intel MPI version to avoid performance degradation by @caic99 in #4065
• CI: update runner config by @caic99 in #4088
• CI: build images with tags on self-hosted runner by @caic99 in #4089
• CI: fix the incorrect argument order in Autotest.sh by @dzzz2001 in #4118

New Contributors

• @Luc1anoo made their first contribution in #4134
• @LiuXiaohui123321 made their first contribution in #4147

Full Changelog: v3.6.2...v3.6.3

v3.6.2

Feature

• output times for lambda inner loop by @hongriTianqi in #3982
• output mag force in spin constraint calculation by @hongriTianqi in #4037
• add pw_diag_ndim parameter to adjust efficiency for users by @haozhihan in #3998

Fix

• fix issue 3985 about dcu compiling by @haozhihan in #3986
• bug in plot-tools by @1041176461 in #3990
• remove the dependence of EXX on RPA by @maki49 in #3969
• remove parameter_pool.cpp in CMakeLists.txt by @WHUweiqingzhou in #3983
• bug of out_band when kpar > 1 by @Qianruipku in #3963
• multiple memory leak and array access out of bound by @caic99 in #3997
• memory leak in tddft by @caic99 in #4012
• tddft memory leak by @caic99 in #4020
• some variables from pointers to vector by @AmengFromCDH in #3977
• pointers to vectors by @DylanWRh in #3980
• new-delete with stl::vector in H_Ewald_pw.cpp by @QztOc07 in #3996
• pointers to vectors in bessel_basis.cpp by @Fisheory in #3993
• output final mag instead of initial mag in STRU_ION_D by @WHUweiqingzhou in #4044
• add a check_rho() to avoid negative charge density by @WHUweiqingzhou in #4053

Test and Docs

• case test for noncolin force by @hongriTianqi in #4048
• update cuda tests by @caic99 in #4032
• add some docs by @WHUweiqingzhou in #4039
• update clang-tidy config by @caic99 in #4010
• format CMakeLists.txt using cmake_format by @caic99 in #4014
• update version by @pxlxingliang in #4061
• add docs about using MPI in docker. by @grysgreat in #4060

New Contributors

• @QztOc07 made their first contribution in #3996

Full Changelog: v3.6.1...v3.6.2

v3.6.1

What's Changed

Feature

• Add INPUT parameter bands_to_print for LCAO basis set by @AsTonyshment in #3934
• Add a new Davidson iteration method called subspace davidson for pw basis by @haozhihan in #3903
• Enable 'calculation=test_memory" function again by @mohanchen in #3919
• add force and stress output for noncollinear calculation with soc by @hongriTianqi in #3933
• add so-called U-Ramping method to improve DFTU convergence by @WHUweiqingzhou in #3890
• read and write Hexx(R) in CSR format by @maki49 in #3727

Fix

• Bug when kpar > 1, nspin=2, and cell-relax by @Qianruipku in #3957
• Fix mistakes in TDDFT docs by @ESROAMER in #3841
• Fix the hexadecimal output in MD with OFDFT by @sunliang98 in #3896
• Initialize an int variable "nrotkm" in klist.cpp by @randomname23333 in #3908
• Initialize variable "no_use_c4" in bessel_basis.cpp by @Fisheory in #3910
• Initialized some variables in projgen.cpp by @Haerxile in #3905
• Update bessel_basis.cpp by @bot10032 in #3911
• array overreach in psi2rho of uspp by @YuLiu98 in #3961
• change the unit of decay gradient by @hongriTianqi in #3826
• compiling warning in veff_lcao.cpp by @dyzheng in #3901
• delete an extra bracket by @WHUweiqingzhou in #3863
• dos plot for nspin=2 by @1041176461 in #3928
• fix a bug in get_dmk_vector() and make some refactor of get-function by @WHUweiqingzhou in #3893
• initial the file : source/module_ri/RI_2D_Comm.cpp and ABF_Construct by @RobertRainbow in #3898
• initialize some variables by @DylanWRh in #3846
• initialize some variables by @Esperanzalukas in #3904
• initialize some variables by @yang2022i in #3917
• initialize variables by @Zjhjunhao in #3887
• initialized winput::imp_pao = 0 in winput.cpp by @charches in #3897
• llk_initialization of read_atoms.cpp by @Luckken21 in #3900
• memory record for wrapper data in HContainer by @dyzheng in #3962
• potentially uninitialized variables in calculation by @OldDriver233 in #3834
• some variables initialized by @AmengFromCDH in #3858

CI

• Mirror the repository to Gitee by @njzjz-bot in #3952

Docs

• A clearer notification for the easy installation part by @flinky-ai in #3871
• Update description for ESolver by @mohanchen in #3828
• update the default recommended requirements for conda by @caic99 in #3924

Perf

• Improve the performence of dav-subspace method in pw basis by @haozhihan in #3953
• use converged occupation matrix for initial DFTU calculation in MD calculation by @dyzheng in #3837

Refactor

• Improve the C++ code quality by @mohanchen in #3945
• Keep updating esolver and related source files by @mohanchen in #3853
• LCAO refactor step 4 by @mohanchen in #3921
• Refactor LCAO code Step 3 by @mohanchen in #3914
• Refactor LCAO step 2 by @mohanchen in #3874
• Refactoring LCAO codes. by @mohanchen in #3860
• Remove direct references to GlobalV related to function read_cube. by @Cstandardlib in #3824
• Update ORB_atomic.cpp by @aFlyingOctopus in #3835
• Update berryphase.cpp by @Pureorangeade in #3876
• Vector instead of New, changed by Linbo Cao by @RobertRainbow in #3975
• change namespace A::B{} to namespace A{namespace B{}} by @PeizeLin in #3960
• exchange some pointers into vectors by @Zjhjunhao in #3965
• replace with vector by @jwsyzy in #3972

Test

• Save simpson test results to file by @jieli-matrix in #3842
• add unit test of DFTUNew and refactor some code by @dyzheng in #3814
• modify the precision criteria of Simpson algorithm by @jieli-matrix in #3849
• save precision results to file when building unit tests by @jieli-matrix in #3829

New Contributors

• @Cstandardlib made their first contribution in #3824
• @AmengFromCDH made their first contribution in #3858
• @OldDriver233 made their first contribution in #3834
• @Pureorangeade made their first contribution in #3876
• @flinky-ai made their first contribution in #3871
• @aFlyingOctopus made their first contribution in #3835
• @DylanWRh made their first contribution in #3846
• @randomname23333 made their first contribution in #3908
• @Haerxile made their first contribution in #3905
• @Luckken21 made their first contribution in #3900
• @Zjhjunhao made their first contribution in #3887
• @charches made their first contribution in #3897
• @Esperanzalukas made their first contribution in #3904
• @Fisheory made their first contribution in #3910
• @bot10032 made their first contribution in #3911
• @yang2022i made their first contribution in #3917
• @RobertRainbow made their first contribution in #3898
• @njzjz-bot made their first contribution in #3952
• @jwsyzy made their first contribution in #3972

Full Changelog: v3.6.0...v3.6.1

v3.6.0

What's Changed

Feature

• Feature: release numerically stable QO with hands-on manual in tools/qo/ by @kirk0830 in #3669
• Feature: make mixing restarts if mixing_restart is smaller than drho by @WHUweiqingzhou in #3681
• Feature: Pythonization of ModuleNAO by @jieli-matrix in #3642
• Feature: Add readin-json support by @grysgreat in #3648
• Feature: Pythonization of NumericalRadial by @jieli-matrix in #3712
• Feature: output dkin for metaGGA calculations by @WHUweiqingzhou in #3700
• Feature: Visualize numerical orbital in pyabacus by @jieli-matrix in #3726
• Feature: enable the construction of RadialSet from individual spherical Bessel function by @jinzx10 in #3721
• Feature: QO MPI parallelization on both k and cell vector R when calculating overlap matrix by @kirk0830 in #3707
• Feature & Refactor: restart from Hexx by @maki49 in #3451
• Feature: new method of DFT+U calculation, add parametor "onsite_radius" for projections modulation. by @dyzheng in #3682

Tests

• Test: upload file for unittest of toQO::read_ovlp by @kirk0830 in #3724
• Test: add tests for jY-jY two-center integrals by @jinzx10 in #3734
• Test: add pyabacus CI test by @jieli-matrix in #3750
• test: in integrate test, skip running test if test folder do not exist. by @pxlxingliang in #3793
• test: set ENABLE_RAPIDJSON=ON in dockerfile to output abacus.json by @pxlxingliang in #3788

Refactor

• Refactor: move Module_IO::output_radial into RadialSet class to make module_io and module_nao decoupled by @kirk0830 in #3680
• Reflactor: new json array support and add json tree of abacus-output by @grysgreat in #3687
• Refactor: Removed GlobalVs related to function ModuleIO::write_dm by @AsTonyshment in #3797
• Refactor: Removed GlobalVs related to module_io/istate_envelope.cpp by @AsTonyshment in #3801
• Refactor: remove some global variables in read_dm and read_wfc_nao by @dzzz2001 in #3794

Bug Fixes

• Fix: standalone FindBLAS.cmake, mislink to global-visible lib by @yizeyi18 in #3623
• Fix outdated comment by @jinzx10 in #3694
• Fix: Support pseudopotential with dense grid by @sunliang98 in #3678
• Fix: fix bugs in TB2J docs by @WHUweiqingzhou in #3709
• Fix: delete useless version info in CMakeList.txt by @WHUweiqingzhou in #3731
• Fix: no cal_nlm_tot in cal_force_stress and onsite_radius > rcut_NAOs by @dyzheng in #3732
• Bug: fix undefined symbol in pyabacus by @jieli-matrix in #3740
• Bug: Fix intel undefined error in pyabacus by @jieli-matrix in #3742
• Fix: error with skipping no_U elements by @dyzheng in #3748
• Fix: automatically turn off symmetry when not all atoms are moveable by @maki49 in #3738
• Bug: Fix Intel compile warnings by @jieli-matrix in #3756
• Fix: fix a json in init-element. by @grysgreat in #3818
• fix: the natom in abacus.json by @pxlxingliang in #3822
• Fix: Support LPS in psp6 format by @sunliang98 in #3741
• Fix FindLibxc.cmake to use /usr/include as include directory by @yizeyi18 in #3771
• Fix: update the default two-center integration algorithm for Makefile build by @jinzx10 in #3773
• Fix: warn not to set nupdown in deltaspin calcualtion by @hongriTianqi in #3765
• Fix: ELPA test compile by @yizeyi18 in #3774
• fix the output value of ediff in abaucs.json by @pxlxingliang in #3787
• Fix: fix cases by @WHUweiqingzhou in #3804
• Fix: warning message of nspin=4 by @dyzheng in #3791
• Fix: timer error of Veff::contributeHR in gamma_only calculation by @dyzheng in #3799
• Fix: fix scf_nmax restart by @WHUweiqingzhou in #3808
• Refactor&Fix: remove normalization of numerical atomic orbitals in psi_initializer by @kirk0830 in #3716

Build

• add codecov token by @njzjz in #3683
• install: write the commit to commit.h instead of setting the macro COMMIT by @pxlxingliang in #3692
• Toolchain modification by @QuantumMisaka in #3733
• Build: fix clang-format file format by @caic99 in #3736
• add lapack/blas wrapper as suggested in #3706 by @yizeyi18 in #3757

Documentation

• Docs: Add docs for pyabacus by @jieli-matrix in #3697
• add TB2J interface docs (#3702) by @Shen-Zhen-Xiong in #3703
• docs: add the link for conda FAQ by @njzjz in #3728
• Docs: add a faq by @WHUweiqingzhou in #3723
• Doc: update doc about EXX restart and symmetry by @maki49 in #3764
• Doc: add a warning in pull request template by @hongriTianqi in #3768
• Docs: Add json docs. by @grysgreat in #3754
• docs: fix the comment in abacus.json by @pxlxingliang in #3784

New Contributors

• @dzzz2001 made their first contribution in #3794

Full Changelog: v3.5.4...v3.6.0

v3.5.4

Feature

• Feature: Added json array support. Implement init json by @grysgreat in #3612
• Feature: extended support on arbitrary atom symbols defined in STRU to calculate QO_OVLP data by @kirk0830 in #3651
• Feature: add a new parameter nelec_delta by @WHUweiqingzhou in #3641
• Feature: including the Slater screening to more accurately estimate the hydrogen radial function by @kirk0830 in #3633

Refactor

• Test: add a new UnitTest to protect save_DMR() by @WHUweiqingzhou in #3659

Bug Fixes

• Fix: fix accessing out-of-bounds in save_DMR() with changed nnr by @WHUweiqingzhou in #3620
• Fix: correct the way to use two-center-intergral and support more hydrogen-like orbitals strategy by @kirk0830 in #3606
• Fix: mulliken_charge error for magnetism_atom_y by @dyzheng in #3635
• Fix: fix nbands<ncpus in atom example by @WHUweiqingzhou in #3636
• Fix: error in reading sc.json file by @hongriTianqi in #3638
• Fix: reuse elpa_handle to avoid memory_leak by @dyzheng in #3637
• Fix: fix the bug when reuse the numerical_basis class instance by @kirk0830 in #3615
• Fix: the bug of possible large movement of atom position caused by periodicity in BFGS method by @pxlxingliang in #3658
• Fix: analyze the spin-up part's symmetry for AFM cases by @maki49 in #3666
• Fix: change error to warning in Symmetry for user friendliness by @maki49 in #3670

Build

• Toolchain 2024.1 by @QuantumMisaka in #3619

Full Changelog: v3.5.3...v3.5.4

v3.5.3

Feature

• Refactor&Feature: Rebuild rapidjson module. by @grysgreat in #3545
• Feature: Add json array support and unit test. by @grysgreat in #3584
• Feature: support double_grid in mix_rho_recip_new() by @WHUweiqingzhou in #3577
• Feature: TDDFT velocity gague by @ESROAMER in #3576
• Feature: Pythonization of math_integral in Module Base by @jieli-matrix in #3574

Refactor

• Refactor: namespace ABFs_Construct::PCA by @PeizeLin in #3546
• Refactor: charge_mixing::set_mixing() by @WHUweiqingzhou in #3596
• Refactor: split Charge_Mixing::set_mixing into set_mixing and init_mixing by @WHUweiqingzhou in #3601
• Refactor: let Charge_Mixing::inner_product_recip_hartree supports all cases by @WHUweiqingzhou in #3604
• Refactor: rename Kerker_screen_recip() and add more UnitTests to protect Charge_Mixing by @WHUweiqingzhou in #3609

Bug Fixes

• Fix: add docs and example to show how to perform magnetic calculations of atomic systems by @WHUweiqingzhou in #3571
• Fix the bug that the Wannier90 interface does not report error informations when reading files under MPI. by @jingan-181 in #3563
• Fix: Address compilation warnings in clang compiler by @denghuilu in #3593
• Fix: memory leak in module_nao by @dyzheng in #3602

Build

• CUDA: Add device error check for CUDA API and device function by @denghuilu in #3575
• GPU: Add rocm error check by @denghuilu in #3585

Documentation

• Docs: add introductions to ci/cd and new modules by @caic99 in #3610

Full Changelog: v3.5.2...v3.5.3