This is an automatically generated1 list of life sciences open source software contributors including pharmaceutical companies and cross organizations, biotechnology companies, research institutes, open source communities and individuals, plus some life sciences software from technological companies. It will be periodically refreshed from the following GitHub accounts.
You can also access the ranked listing of open source software they share, what they have updated lately and which topics are covered by these software.
This listing gives you access to all GitHub accounts used in this survey:
Tip
If you feel something is missing or misattributed please contact us for modification, or fork this repository, edit the relevant source file and make a pull request.
Note
Repos includes forked repositories but excludes ".github" or account namesake ones.
followers accumulates accounts followers (or repositories watchers) whether they are unique or not.
| Rank | Group | GitHub Account | Stars | Repos | Followers |
|---|---|---|---|---|---|
| 1 | Google DeepMind | 12472 | 3 | 260 | |
| google-deepmind Selected repositories: alphafold, alphamissense, nuclease_design |
12472 | 3 | 260 | ||
| 2 | Heng Li lab | 10963 | 144 | 3834 | |
 Heng Li |
10190 | 118 | 3700 | ||
| chhylp123 Selected repositories: hifiasm |
490 | 1 | 28 | ||
| haowenz Selected repositories: chromap |
184 | 1 | 7 | ||
| xfengnefx Selected repositories: hifiasm-meta |
59 | 1 | 5 | ||
 Heng Li lab |
40 | 23 | 94 | ||
| 3 | AstraZeneca | 7479 | 133 | 376 | |
 AstraZeneca |
4234 | 65 | 323 | ||
 AstraZeneca - Molecular AI |
2672 | 38 | 0 | ||
 AstraZeneca - NGS Team |
447 | 16 | 39 | ||
 AstraZeneca Centre for Genomics Research - publications |
93 | 7 | 14 | ||
 AstraZeneca Code Club |
33 | 4 | 0 | ||
 AstraZeneca Omics |
0 | 3 | 0 | ||
| 4 | DeepChem project | 5888 | 19 | 0 | |
 deepchem |
5888 | 19 | 0 | ||
| 5 | scverse community | 5404 | 44 | 781 | |
 scverse |
5404 | 44 | 781 | ||
| 6 | Wei Shen | 5335 | 110 | 1200 | |
 Wei Shen |
5335 | 110 | 1200 | ||
| 7 | Novartis | 4811 | 126 | 424 | |
 RDKit |
3772 | 38 | 294 | ||
 Novartis |
1038 | 86 | 130 | ||
 NovartisFoundation |
1 | 1 | 0 | ||
 Novartis_Switzerland |
0 | 1 | 0 | ||
| 8 | Biopython Project | 4213 | 1 | 168 | |
| biopython Selected repositories: biopython |
4213 | 1 | 168 | ||
| 9 | AlQuraishi Laboratory | 4179 | 12 | 173 | |
 AQ Laboratory |
4179 | 12 | 173 | ||
| 10 | Meta | 4176 | 2 | 137 | |
| facebookresearch Selected repositories: esm, fastMRI |
4176 | 2 | 137 | ||
| 11 | Broad Institute | 4050 | 4 | 470 | |
| broadinstitute Selected repositories: gatk, cromwell, picard, infercnv |
4050 | 4 | 470 | ||
| 12 | Samtools organisation | 4035 | 15 | 207 | |
 samtools |
4035 | 15 | 207 | ||
| 13 | 3877 | 2 | 212 | ||
| google Selected repositories: deepvariant, nucleus |
3877 | 2 | 212 | ||
| 14 | Open Source Genomics Toolbox | 3270 | 25 | 0 | |
 OpenGene - Open Source Genomics Toolbox |
3270 | 25 | 0 | ||
| 15 | Roche | 3129 | 277 | 535 | |
 Roche/Genentech - Insights Engineering |
984 | 86 | 235 | ||
 Genentech |
795 | 84 | 141 | ||
 The Bioinformatics Repository |
636 | 19 | 29 | ||
 F. Hoffmann-La Roche |
610 | 24 | 125 | ||
 BEDApub |
104 | 46 | 0 | ||
 Roche Diagnostics Computation Science & Informatics |
0 | 18 | 5 | ||
| 16 | Shrödinger | 2661 | 105 | 241 | |
 Schrodinger, Inc. |
2661 | 105 | 241 | ||
| 17 | Söding Lab | 2640 | 51 | 136 | |
 Söding Lab |
2640 | 51 | 136 | ||
| 18 | European Bioinformatics Institute | 2407 | 704 | 187 | |
 The ChEMBL Group |
997 | 71 | 71 | ||
 EBISPOT |
563 | 124 | 37 | ||
 MGnify |
479 | 157 | 64 | ||
 EBI Gene Expression Group |
216 | 178 | 0 | ||
 UniProt (EBI) |
88 | 61 | 12 | ||
 EBI BioSamples Database Project |
43 | 69 | 3 | ||
 EMBL-EBI-GCA |
13 | 17 | 0 | ||
 EBI BioStudies |
8 | 27 | 0 | ||
| 19 | Bioconductor | 2008 | 310 | 230 | |
 Bioconductor |
2008 | 310 | 230 | ||
| 20 | Mila-Quebec AI Institute | 2005 | 6 | 66 | |
| DeepGraphLearning Selected repositories: torchdrug, GearNet, ConfGF, ProtST, DiffPack, ESM-GearNet |
2005 | 6 | 66 | ||
| 21 | Bayer | 1763 | 145 | 3800 | |
 Bayer Open Source |
1447 | 108 | 1500 | ||
 Bayer AG |
301 | 37 | 0 | ||
 Bayer |
15 | 0 | 2300 | ||
| 22 | Open Microscopy Environment | 1704 | 337 | 131 | |
 Open Microscopy Environment |
1704 | 337 | 131 | ||
| 23 | Allen Institute for AI | 1629 | 1 | 52 | |
| allenai Selected repositories: scispacy |
1629 | 1 | 52 | ||
| 24 | The Bioconda Team | 1595 | 1 | 96 | |
| bioconda Selected repositories: bioconda-recipes |
1595 | 1 | 96 | ||
| 25 | Greene Laboratory | 1576 | 4 | 155 | |
| greenelab Selected repositories: deep-review, tybalt, pancancer, BioBombe |
1576 | 4 | 155 | ||
| 26 | Baidu | 1566 | 3 | 70 | |
| PaddlePaddle Selected repositories: PaddleHelix |
799 | 1 | 25 | ||
| baidu-research Selected repositories: NCRF, GPN |
767 | 2 | 45 | ||
| 27 | Slicer Community | 1521 | 1 | 38 | |
| Slicer Selected repositories: Slicer |
1521 | 1 | 38 | ||
| 28 | Big Data Genomics project | 1363 | 23 | 17 | |
 Big Data Genomics |
1363 | 23 | 17 | ||
| 29 | Galaxy Community | 1329 | 1 | 69 | |
| galaxyproject Selected repositories: galaxy |
1329 | 1 | 69 | ||
| 30 | Seqera Labs | 1185 | 1 | 37 | |
| MultiQC Selected repositories: MultiQC |
1185 | 1 | 37 | ||
| 31 | dcm4che community | 1165 | 1 | 119 | |
| dcm4che Selected repositories: dcm4che |
1165 | 1 | 119 | ||
| 32 | Owkin | 1139 | 39 | 153 | |
 Owkin |
1139 | 39 | 153 | ||
| 33 | VG Team | 1072 | 1 | 48 | |
| vgteam Selected repositories: vg |
1072 | 1 | 48 | ||
| 34 | Samuel Lampa | 1055 | 1 | 38 | |
| scipipe Selected repositories: scipipe |
1055 | 1 | 38 | ||
| 35 | Novo Nordisk | 1017 | 166 | 47 | |
 DTU Biosustain |
938 | 104 | 42 | ||
 novonordisk-research |
56 | 13 | 0 | ||
 NovoNordisk-OpenSource |
16 | 26 | 0 | ||
 Agile Arch Angels |
5 | 1 | 0 | ||
 Novo Nordisk Data Management & Analytics |
1 | 11 | 0 | ||
 Cognix |
1 | 1 | 1 | ||
 Novo Nordisk Foundation Center for Basic Metabolic Research |
0 | 5 | 0 | ||
 MedManageW |
0 | 1 | 0 | ||
 Impact department at Novo Nordisk Foundation |
0 | 1 | 4 | ||
 Novo Nordisk - IT Site MOC |
0 | 1 | 0 | ||
 Novo Nordisk Research Center Oxford | DD&IT R&ED |
0 | 1 | 0 | ||
 Novo Nordisk PS Biopharm |
0 | 1 | 0 | ||
| 36 | Merck & Co. | 1006 | 86 | 135 | |
 Merck Sharp & Dohme Corp. a subsidiary of Merck & Co., Inc. |
1006 | 76 | 135 | ||
 Merck DL account |
0 | 10 | 0 | ||
| 37 | The Hail team | 946 | 1 | 55 | |
| hail-is Selected repositories: hail |
946 | 1 | 55 | ||
| 38 | Chan Zuckerberg Initiative | 882 | 2 | 58 | |
| chanzuckerberg Selected repositories: cellxgene, MedMentions |
882 | 2 | 58 | ||
| 39 | Laboratory of Evolutionary Design | 865 | 2 | 51 | |
 Laboratory of Evolutionary Design |
865 | 2 | 51 | ||
| 40 | Calico | 828 | 39 | 81 | |
 Calico |
828 | 39 | 81 | ||
| 41 | BenevolentAI | 824 | 14 | 0 | |
 BenevolentAI |
824 | 14 | 0 | ||
| 42 | Insilico Medicine | 786 | 14 | 55 | |
 Insilico Medicine |
786 | 14 | 55 | ||
| 43 | Shengchao Liu | 782 | 107 | 180 | |
 Shengchao Liu |
782 | 107 | 180 | ||
| 44 | Nicolas Roduit | 763 | 1 | 49 | |
| nroduit Selected repositories: Weasis |
763 | 1 | 49 | ||
| 45 | pharmaverse | 682 | 45 | 321 | |
 pharmaverse |
682 | 45 | 321 | ||
| 46 | Insitro | 595 | 8 | 41 | |
 insitro |
595 | 8 | 41 | ||
| 47 | Centro de Tecnologia da Informação Renato Archer (CTI) | 584 | 1 | 37 | |
| invesalius Selected repositories: invesalius3 |
584 | 1 | 37 | ||
| 48 | OpenPharma | 528 | 54 | 126 | |
 openpharma |
528 | 54 | 126 | ||
| 49 | Amazon | 516 | 6 | 88 | |
| aws-samples Selected repositories: aws-batch-genomics, aws-genomics-workflows, aws-healthcare-lifescience-ai-ml-sample-notebooks, amazon-omics-tutorials, aws-healthimaging-samples, amazon-healthlake-dicom-extension |
516 | 6 | 88 | ||
| 50 | Acellera | 514 | 28 | 29 | |
 Acellera |
514 | 28 | 29 | ||
| 51 | Tencent | 458 | 2 | 13 | |
| tencent-ailab Selected repositories: DrugOOD, grover |
458 | 2 | 13 | ||
| 52 | PHUSE | 371 | 47 | 101 | |
 PHUSE |
371 | 47 | 101 | ||
| 53 | Neurogenomics Lab | 337 | 76 | 51 | |
 neurogenomics |
337 | 76 | 51 | ||
| 54 | Open Targets | 315 | 64 | 78 | |
 Open Targets |
315 | 64 | 78 | ||
| 55 | Sanofi | 308 | 38 | 1143 | |
 Sanofi-Public |
177 | 23 | 42 | ||
 Sanofi IADC |
131 | 8 | 0 | ||
 ServiceNow Development Factory |
0 | 4 | 0 | ||
 DevOps-Sandbox |
0 | 2 | 1 | ||
 Sanofi-GitHub |
0 | 1 | 1100 | ||
| 56 | Recursion | 287 | 29 | 88 | |
 Recursion |
287 | 29 | 88 | ||
| 57 | Pfizer | 257 | 60 | 0 | |
 Pfizer Open Source |
198 | 26 | 0 | ||
 openPfizer |
49 | 9 | 0 | ||
 Pfizer R&D - Deprecated |
10 | 12 | 0 | ||
 Pfizer - ResApp Health Limited |
0 | 12 | 0 | ||
 Pfizer Operations & Insights |
0 | 1 | 0 | ||
| 58 | Regeneron Pharmaceuticals | 230 | 11 | 48 | |
 RegeneronGeneticsCenter |
206 | 6 | 45 | ||
 REGN-MPDS |
24 | 5 | 3 | ||
| 59 | Johnson & Johnson | 227 | 36 | 0 | |
 Johnson & Johnson |
227 | 36 | 0 | ||
| 60 | Microsoft | 216 | 6 | 53 | |
| microsoft Selected repositories: station-b-libraries, zero-shot-scfoundation, Genomics-Quickstart, LLM4ScientificDiscovery, BioModelAnalyzer |
181 | 5 | 39 | ||
| Azure Selected repositories: Bio-Compliancy |
35 | 1 | 14 | ||
| 61 | Moderna | 214 | 5 | 26 | |
 Moderna |
214 | 5 | 26 | ||
| 62 | GSK | 201 | 21 | 15 | |
 GSK Biostatistics |
138 | 14 | 0 | ||
 GSK.AI |
63 | 7 | 15 | ||
| 63 | Biogen | 186 | 14 | 15 | |
 Biogen, Inc. |
114 | 4 | 0 | ||
 Biogen Molecular Informatics |
72 | 3 | 10 | ||
 BioGenR |
0 | 3 | 1 | ||
 Helix Biogen Institute |
0 | 2 | 2 | ||
 biogen-clarivate |
0 | 1 | 2 | ||
 Biogen |
0 | 1 | 0 | ||
| 64 | Boehringer Ingelheim | 178 | 43 | 63 | |
 Boehringer Ingelheim |
165 | 35 | 59 | ||
 Boehringer Ingelheim Computational Biology Group (DE) |
7 | 7 | 2 | ||
 Boehringer Ingelheim - Computational Chemisty Group |
6 | 1 | 2 | ||
| 65 | Eli Lilly | 152 | 100 | 1105 | |
 Eli Lilly & Company |
152 | 10 | 1100 | ||
 Eli Lilly & Co (Evaluation) |
0 | 88 | 5 | ||
 Eli-lilly Company Challenge team |
0 | 2 | 0 | ||
| 66 | Benson Genomics Lab | 148 | 4 | 0 | |
 Benson-Genomics-Lab |
148 | 4 | 0 | ||
| 67 | Open Bioinformatics Foundation | 138 | 13 | 81 | |
 Open Bioinformatics Foundation |
138 | 13 | 81 | ||
| 68 | Exscientia | 136 | 12 | 37 | |
 Exscientia |
136 | 12 | 37 | ||
| 69 | OpenBioSim | 123 | 14 | 35 | |
 The OpenBioSim Community Interest Company |
123 | 14 | 35 | ||
| 69 | Geyan Ye | 123 | 1 | 3 | |
| blazerye Selected repositories: DrugAssist |
123 | 1 | 3 | ||
| 70 | Hoelzer Bioinformatics Lab | 116 | 11 | 0 | |
 hoelzer-lab |
116 | 11 | 0 | ||
| 71 | Absci | 91 | 5 | 0 | |
 Absci |
91 | 5 | 0 | ||
| 72 | AbbVie | 78 | 17 | 10 | |
 AbbVie - Computational Genomics |
41 | 9 | 0 | ||
 AbbVie R&D External |
37 | 8 | 10 | ||
| 73 | Flax | 76 | 1 | 24 | |
| flaxsearch Selected repositories: BioSolr |
76 | 1 | 24 | ||
| 74 | PathAI | 67 | 11 | 22 | |
 PathAI |
67 | 11 | 22 | ||
| 75 | Gilead Sciences | 57 | 17 | 21 | |
 Gilead-BioStats |
57 | 5 | 0 | ||
 Gilead-Biometrics-DataEngineering-Demo |
0 | 5 | 0 | ||
 Kite Research & Development |
0 | 2 | 21 | ||
 ServiceTransition |
0 | 2 | 0 | ||
 Gilead-IT-GCDM-PDM |
0 | 2 | 0 | ||
 Gilead-Research-Data-Sciences |
0 | 1 | 0 | ||
| 76 | healx | 56 | 34 | 12 | |
 healx |
56 | 34 | 12 | ||
| 77 | Elo Lab | 46 | 30 | 8 | |
 Elo Lab |
46 | 30 | 8 | ||
| 78 | Enveda Biosciences | 43 | 22 | 27 | |
 Enveda Biosciences |
43 | 22 | 27 | ||
| 79 | PharmaLedger Consortium | 35 | 62 | 12 | |
 PharmaLedger Consortium |
35 | 62 | 12 | ||
| 80 | Editas Medicine | 29 | 5 | 1 | |
 Editas Medicine, Inc. |
29 | 5 | 1 | ||
| 80 | Frank Koopmans | 29 | 2 | 5 | |
 Frank Koopmans |
29 | 2 | 5 | ||
| 81 | Aifred Health | 27 | 6 | 2 | |
 Aifred Health |
27 | 6 | 2 | ||
| 82 | Merck Group | 23 | 22 | 96 | |
 AC BO Hackathon |
23 | 22 | 29 | ||
 Merck KGaA |
0 | 0 | 67 | ||
| 82 | Deep Genomics | 23 | 10 | 21 | |
 Deep Genomics |
23 | 10 | 21 | ||
| 83 | VantAI | 20 | 2 | 28 | |
 VantAI |
20 | 2 | 28 | ||
| 84 | Cyclica | 16 | 12 | 4 | |
 Cyclica |
16 | 12 | 4 | ||
| 85 | Atomwise | 14 | 1 | 2 | |
 AtomwiseInc |
14 | 1 | 2 | ||
| 86 | Nxera Pharma | 12 | 7 | 0 | |
 SoseiHeptares |
12 | 7 | 0 | ||
| 87 | Bristol Myers Squibb | 10 | 1 | 0 | |
 BMS-CPP |
10 | 1 | 0 | ||
| 87 | Guerbet | 10 | 2 | 0 | |
 Guerbet-AI |
10 | 2 | 0 | ||
| 88 | Technion | 8 | 1 | 1 | |
| technion-cs-nlp Selected repositories: BiologicalTokenizers |
8 | 1 | 1 | ||
| 89 | Les Laboratoires Servier | 5 | 12 | 2 | |
 SERVIER HUB |
5 | 12 | 2 | ||
| 89 | Takeda | 5 | 0 | 0 | |
 Takeda |
5 | 0 | 0 | ||
| 90 | Laboratoires Boiron | 4 | 25 | 1 | |
 Boiron Digital and Mobile |
4 | 25 | 1 | ||
| 91 | Institut Mérieux | 3 | 3 | 2 | |
 Fondation Mérieux |
3 | 1 | 2 | ||
 bioMerieux Support |
0 | 2 | 0 | ||
| 92 | Sumitomo Pharma | 1 | 3 | 0 | |
 Sumitovant Digital Innovation |
1 | 3 | 0 | ||
| 93 | Amgen | 0 | 2 | 4 | |
 Amgen |
0 | 2 | 4 | ||
| 93 | BioNTech | 0 | 1 | 0 | |
 BioNTech US |
0 | 1 | 0 | ||
| 93 | Ceva Santé Animale | 0 | 3 | 11 | |
 Ceva Santé Animale |
0 | 3 | 11 | ||
| 93 | Fresenius | 0 | 6 | 0 | |
 fresenius-dux |
0 | 4 | 0 | ||
 fresenius |
0 | 2 | 0 | ||
| 93 | Jazz Pharmaceuticals | 0 | 1 | 1 | |
 Jazzpharma |
0 | 1 | 1 | ||
| 93 | Organon | 0 | 2 | 0 | |
 organon-gitadmin |
0 | 2 | 0 | ||
| 93 | Viatris | 0 | 1 | 0 | |
 Viatris Emerging Technology |
0 | 1 | 0 | ||
| 93 | Intellia | 0 | 8 | 7 | |
 Intellia Therapeutics |
0 | 8 | 7 | ||
| 93 | Turbine | 0 | 2 | 5 | |
 Turbine.AI |
0 | 2 | 5 |