This is an automatically generated1 list of life sciences open source software contributors including pharmaceutical companies and cross organizations, biotechnology companies, research institutes, open source communities and individuals, plus some life sciences software from technological companies. It will be periodically refreshed from the following GitHub accounts.
You can also access the ranked listing of open source software they share, what they have updated lately and which topics are covered by these software.
This listing gives you access to all GitHub accounts used in this survey:
Tip
If you feel something is missing or misattributed please contact us for modification, or fork this repository, edit the relevant source file and make a pull request.
Note
Repos includes forked repositories but excludes ".github" or account namesake ones.
followers accumulates accounts followers (or repositories watchers) whether they are unique or not.
Rank | Group | GitHub Account | Stars | Repos | Followers |
---|---|---|---|---|---|
1 | Google DeepMind | 12472 | 3 | 260 | |
google-deepmind Selected repositories: alphafold , alphamissense , nuclease_design |
12472 | 3 | 260 | ||
2 | Heng Li lab | 10963 | 144 | 3834 | |
10190 | 118 | 3700 | |||
chhylp123 Selected repositories: hifiasm |
490 | 1 | 28 | ||
haowenz Selected repositories: chromap |
184 | 1 | 7 | ||
xfengnefx Selected repositories: hifiasm-meta |
59 | 1 | 5 | ||
40 | 23 | 94 | |||
3 | AstraZeneca | 7479 | 133 | 376 | |
4234 | 65 | 323 | |||
2672 | 38 | 0 | |||
447 | 16 | 39 | |||
93 | 7 | 14 | |||
33 | 4 | 0 | |||
0 | 3 | 0 | |||
4 | DeepChem project | 5888 | 19 | 0 | |
5888 | 19 | 0 | |||
5 | scverse community | 5404 | 44 | 781 | |
5404 | 44 | 781 | |||
6 | Wei Shen | 5335 | 110 | 1200 | |
5335 | 110 | 1200 | |||
7 | Novartis | 4811 | 126 | 424 | |
3772 | 38 | 294 | |||
1038 | 86 | 130 | |||
1 | 1 | 0 | |||
0 | 1 | 0 | |||
8 | Biopython Project | 4213 | 1 | 168 | |
biopython Selected repositories: biopython |
4213 | 1 | 168 | ||
9 | AlQuraishi Laboratory | 4179 | 12 | 173 | |
4179 | 12 | 173 | |||
10 | Meta | 4176 | 2 | 137 | |
facebookresearch Selected repositories: esm , fastMRI |
4176 | 2 | 137 | ||
11 | Broad Institute | 4050 | 4 | 470 | |
broadinstitute Selected repositories: gatk , cromwell , picard , infercnv |
4050 | 4 | 470 | ||
12 | Samtools organisation | 4035 | 15 | 207 | |
4035 | 15 | 207 | |||
13 | 3877 | 2 | 212 | ||
google Selected repositories: deepvariant , nucleus |
3877 | 2 | 212 | ||
14 | Open Source Genomics Toolbox | 3270 | 25 | 0 | |
3270 | 25 | 0 | |||
15 | Roche | 3129 | 277 | 535 | |
984 | 86 | 235 | |||
795 | 84 | 141 | |||
636 | 19 | 29 | |||
610 | 24 | 125 | |||
104 | 46 | 0 | |||
0 | 18 | 5 | |||
16 | Shrödinger | 2661 | 105 | 241 | |
2661 | 105 | 241 | |||
17 | Söding Lab | 2640 | 51 | 136 | |
2640 | 51 | 136 | |||
18 | European Bioinformatics Institute | 2407 | 704 | 187 | |
997 | 71 | 71 | |||
563 | 124 | 37 | |||
479 | 157 | 64 | |||
216 | 178 | 0 | |||
88 | 61 | 12 | |||
43 | 69 | 3 | |||
13 | 17 | 0 | |||
8 | 27 | 0 | |||
19 | Bioconductor | 2008 | 310 | 230 | |
2008 | 310 | 230 | |||
20 | Mila-Quebec AI Institute | 2005 | 6 | 66 | |
DeepGraphLearning Selected repositories: torchdrug , GearNet , ConfGF , ProtST , DiffPack , ESM-GearNet |
2005 | 6 | 66 | ||
21 | Bayer | 1763 | 145 | 3800 | |
1447 | 108 | 1500 | |||
301 | 37 | 0 | |||
15 | 0 | 2300 | |||
22 | Open Microscopy Environment | 1704 | 337 | 131 | |
1704 | 337 | 131 | |||
23 | Allen Institute for AI | 1629 | 1 | 52 | |
allenai Selected repositories: scispacy |
1629 | 1 | 52 | ||
24 | The Bioconda Team | 1595 | 1 | 96 | |
bioconda Selected repositories: bioconda-recipes |
1595 | 1 | 96 | ||
25 | Greene Laboratory | 1576 | 4 | 155 | |
greenelab Selected repositories: deep-review , tybalt , pancancer , BioBombe |
1576 | 4 | 155 | ||
26 | Baidu | 1566 | 3 | 70 | |
PaddlePaddle Selected repositories: PaddleHelix |
799 | 1 | 25 | ||
baidu-research Selected repositories: NCRF , GPN |
767 | 2 | 45 | ||
27 | Slicer Community | 1521 | 1 | 38 | |
Slicer Selected repositories: Slicer |
1521 | 1 | 38 | ||
28 | Big Data Genomics project | 1363 | 23 | 17 | |
1363 | 23 | 17 | |||
29 | Galaxy Community | 1329 | 1 | 69 | |
galaxyproject Selected repositories: galaxy |
1329 | 1 | 69 | ||
30 | Seqera Labs | 1185 | 1 | 37 | |
MultiQC Selected repositories: MultiQC |
1185 | 1 | 37 | ||
31 | dcm4che community | 1165 | 1 | 119 | |
dcm4che Selected repositories: dcm4che |
1165 | 1 | 119 | ||
32 | Owkin | 1139 | 39 | 153 | |
1139 | 39 | 153 | |||
33 | VG Team | 1072 | 1 | 48 | |
vgteam Selected repositories: vg |
1072 | 1 | 48 | ||
34 | Samuel Lampa | 1055 | 1 | 38 | |
scipipe Selected repositories: scipipe |
1055 | 1 | 38 | ||
35 | Novo Nordisk | 1017 | 166 | 47 | |
938 | 104 | 42 | |||
56 | 13 | 0 | |||
16 | 26 | 0 | |||
5 | 1 | 0 | |||
1 | 11 | 0 | |||
1 | 1 | 1 | |||
0 | 5 | 0 | |||
0 | 1 | 0 | |||
0 | 1 | 4 | |||
0 | 1 | 0 | |||
0 | 1 | 0 | |||
0 | 1 | 0 | |||
36 | Merck & Co. | 1006 | 86 | 135 | |
1006 | 76 | 135 | |||
0 | 10 | 0 | |||
37 | The Hail team | 946 | 1 | 55 | |
hail-is Selected repositories: hail |
946 | 1 | 55 | ||
38 | Chan Zuckerberg Initiative | 882 | 2 | 58 | |
chanzuckerberg Selected repositories: cellxgene , MedMentions |
882 | 2 | 58 | ||
39 | Laboratory of Evolutionary Design | 865 | 2 | 51 | |
865 | 2 | 51 | |||
40 | Calico | 828 | 39 | 81 | |
828 | 39 | 81 | |||
41 | BenevolentAI | 824 | 14 | 0 | |
824 | 14 | 0 | |||
42 | Insilico Medicine | 786 | 14 | 55 | |
786 | 14 | 55 | |||
43 | Shengchao Liu | 782 | 107 | 180 | |
782 | 107 | 180 | |||
44 | Nicolas Roduit | 763 | 1 | 49 | |
nroduit Selected repositories: Weasis |
763 | 1 | 49 | ||
45 | pharmaverse | 682 | 45 | 321 | |
682 | 45 | 321 | |||
46 | Insitro | 595 | 8 | 41 | |
595 | 8 | 41 | |||
47 | Centro de Tecnologia da Informação Renato Archer (CTI) | 584 | 1 | 37 | |
invesalius Selected repositories: invesalius3 |
584 | 1 | 37 | ||
48 | OpenPharma | 528 | 54 | 126 | |
528 | 54 | 126 | |||
49 | Amazon | 516 | 6 | 88 | |
aws-samples Selected repositories: aws-batch-genomics , aws-genomics-workflows , aws-healthcare-lifescience-ai-ml-sample-notebooks , amazon-omics-tutorials , aws-healthimaging-samples , amazon-healthlake-dicom-extension |
516 | 6 | 88 | ||
50 | Acellera | 514 | 28 | 29 | |
514 | 28 | 29 | |||
51 | Tencent | 458 | 2 | 13 | |
tencent-ailab Selected repositories: DrugOOD , grover |
458 | 2 | 13 | ||
52 | PHUSE | 371 | 47 | 101 | |
371 | 47 | 101 | |||
53 | Neurogenomics Lab | 337 | 76 | 51 | |
337 | 76 | 51 | |||
54 | Open Targets | 315 | 64 | 78 | |
315 | 64 | 78 | |||
55 | Sanofi | 308 | 38 | 1143 | |
177 | 23 | 42 | |||
131 | 8 | 0 | |||
0 | 4 | 0 | |||
0 | 2 | 1 | |||
0 | 1 | 1100 | |||
56 | Recursion | 287 | 29 | 88 | |
287 | 29 | 88 | |||
57 | Pfizer | 257 | 60 | 0 | |
198 | 26 | 0 | |||
49 | 9 | 0 | |||
10 | 12 | 0 | |||
0 | 12 | 0 | |||
0 | 1 | 0 | |||
58 | Regeneron Pharmaceuticals | 230 | 11 | 48 | |
206 | 6 | 45 | |||
24 | 5 | 3 | |||
59 | Johnson & Johnson | 227 | 36 | 0 | |
227 | 36 | 0 | |||
60 | Microsoft | 216 | 6 | 53 | |
microsoft Selected repositories: station-b-libraries , zero-shot-scfoundation , Genomics-Quickstart , LLM4ScientificDiscovery , BioModelAnalyzer |
181 | 5 | 39 | ||
Azure Selected repositories: Bio-Compliancy |
35 | 1 | 14 | ||
61 | Moderna | 214 | 5 | 26 | |
214 | 5 | 26 | |||
62 | GSK | 201 | 21 | 15 | |
138 | 14 | 0 | |||
63 | 7 | 15 | |||
63 | Biogen | 186 | 14 | 15 | |
114 | 4 | 0 | |||
72 | 3 | 10 | |||
0 | 3 | 1 | |||
0 | 2 | 2 | |||
0 | 1 | 2 | |||
0 | 1 | 0 | |||
64 | Boehringer Ingelheim | 178 | 43 | 63 | |
165 | 35 | 59 | |||
7 | 7 | 2 | |||
6 | 1 | 2 | |||
65 | Eli Lilly | 152 | 100 | 1105 | |
152 | 10 | 1100 | |||
0 | 88 | 5 | |||
0 | 2 | 0 | |||
66 | Benson Genomics Lab | 148 | 4 | 0 | |
148 | 4 | 0 | |||
67 | Open Bioinformatics Foundation | 138 | 13 | 81 | |
138 | 13 | 81 | |||
68 | Exscientia | 136 | 12 | 37 | |
136 | 12 | 37 | |||
69 | OpenBioSim | 123 | 14 | 35 | |
123 | 14 | 35 | |||
69 | Geyan Ye | 123 | 1 | 3 | |
blazerye Selected repositories: DrugAssist |
123 | 1 | 3 | ||
70 | Hoelzer Bioinformatics Lab | 116 | 11 | 0 | |
116 | 11 | 0 | |||
71 | Absci | 91 | 5 | 0 | |
91 | 5 | 0 | |||
72 | AbbVie | 78 | 17 | 10 | |
41 | 9 | 0 | |||
37 | 8 | 10 | |||
73 | Flax | 76 | 1 | 24 | |
flaxsearch Selected repositories: BioSolr |
76 | 1 | 24 | ||
74 | PathAI | 67 | 11 | 22 | |
67 | 11 | 22 | |||
75 | Gilead Sciences | 57 | 17 | 21 | |
57 | 5 | 0 | |||
0 | 5 | 0 | |||
0 | 2 | 21 | |||
0 | 2 | 0 | |||
0 | 2 | 0 | |||
0 | 1 | 0 | |||
76 | healx | 56 | 34 | 12 | |
56 | 34 | 12 | |||
77 | Elo Lab | 46 | 30 | 8 | |
46 | 30 | 8 | |||
78 | Enveda Biosciences | 43 | 22 | 27 | |
43 | 22 | 27 | |||
79 | PharmaLedger Consortium | 35 | 62 | 12 | |
35 | 62 | 12 | |||
80 | Editas Medicine | 29 | 5 | 1 | |
29 | 5 | 1 | |||
80 | Frank Koopmans | 29 | 2 | 5 | |
29 | 2 | 5 | |||
81 | Aifred Health | 27 | 6 | 2 | |
27 | 6 | 2 | |||
82 | Merck Group | 23 | 22 | 96 | |
23 | 22 | 29 | |||
0 | 0 | 67 | |||
82 | Deep Genomics | 23 | 10 | 21 | |
23 | 10 | 21 | |||
83 | VantAI | 20 | 2 | 28 | |
20 | 2 | 28 | |||
84 | Cyclica | 16 | 12 | 4 | |
16 | 12 | 4 | |||
85 | Atomwise | 14 | 1 | 2 | |
14 | 1 | 2 | |||
86 | Nxera Pharma | 12 | 7 | 0 | |
12 | 7 | 0 | |||
87 | Bristol Myers Squibb | 10 | 1 | 0 | |
10 | 1 | 0 | |||
87 | Guerbet | 10 | 2 | 0 | |
10 | 2 | 0 | |||
88 | Technion | 8 | 1 | 1 | |
technion-cs-nlp Selected repositories: BiologicalTokenizers |
8 | 1 | 1 | ||
89 | Les Laboratoires Servier | 5 | 12 | 2 | |
5 | 12 | 2 | |||
89 | Takeda | 5 | 0 | 0 | |
5 | 0 | 0 | |||
90 | Laboratoires Boiron | 4 | 25 | 1 | |
4 | 25 | 1 | |||
91 | Institut Mérieux | 3 | 3 | 2 | |
3 | 1 | 2 | |||
0 | 2 | 0 | |||
92 | Sumitomo Pharma | 1 | 3 | 0 | |
1 | 3 | 0 | |||
93 | Amgen | 0 | 2 | 4 | |
0 | 2 | 4 | |||
93 | BioNTech | 0 | 1 | 0 | |
0 | 1 | 0 | |||
93 | Ceva Santé Animale | 0 | 3 | 11 | |
0 | 3 | 11 | |||
93 | Fresenius | 0 | 6 | 0 | |
0 | 4 | 0 | |||
0 | 2 | 0 | |||
93 | Jazz Pharmaceuticals | 0 | 1 | 1 | |
0 | 1 | 1 | |||
93 | Organon | 0 | 2 | 0 | |
0 | 2 | 0 | |||
93 | Viatris | 0 | 1 | 0 | |
0 | 1 | 0 | |||
93 | Intellia | 0 | 8 | 7 | |
0 | 8 | 7 | |||
93 | Turbine | 0 | 2 | 5 | |
0 | 2 | 5 |