TOPICS.md

Which topics are covered by life sciences open source software

This is an automatically generated¹ list of topics covered by open source software from pharmaceutical companies and cross organizations, biotechnology companies, research institutes, open source communities and individuals, plus some life-science software from technological companies.

It's made from a curated list of GitHub accounts, and will be periodically refreshed from these sources' repositories.

Unleash serendipity to discover new software from the accounts and repositories we selected!

You can also access the ranked listing of open source software they share and what they have updated lately.

Ranked by frequence

Rank	Count	Topic
1	121	bioinformatics
2	96	r
3	86	omero
4	77	ansible
5	75	bioconductor-package
6	70	core-package
7	59	python
8	55	genomics
9	48	docker
10	47	role
11	38	deep-learning
12	32	ome
13	28	machine-learning
14	25	bioconductor
14	25	drug-discovery
15	23	nest
16	20	clinical-trials
16	20	github-actions
16	20	react
17	19	golang
18	18	r-package
19	17	cheminformatics
19	17	ngs
20	16	beat-undefined
21	15	shiny
22	14	webapp
23	13	rdf
23	13	knowledge-graph
23	13	biology
23	13	molecule
23	13	metagenomics
24	12	data-science
24	12	single-cell
24	12	deployment
24	12	chemistry
24	12	openmicroscopy
24	12	scverse
25	11	rna-seq
25	11	visualization
25	11	monitoring
25	11	cdisc
25	11	shacl
25	11	beat-not-applicable
25	11	linked-data
25	11	protein-structure
25	11	sequence-alignment
26	10	actions
26	10	pytorch
26	10	elasticsearch
26	10	data-catalog
26	10	cloud-native
26	10	fair
26	10	triplestore
26	10	fair-data
26	10	findable
26	10	data-catalogue
26	10	colid
26	10	java
26	10	server
26	10	bio-formats
26	10	build
26	10	sequencing
27	9	bayer-reg-none
27	9	transcriptomics
27	9	omero-server
27	9	tool
28	8	hacktoberfest
28	8	pharma
28	8	metadata
28	8	prometheus
28	8	rstats
28	8	astrazeneca
28	8	workflow
28	8	epigenomics
28	8	omero-web
28	8	dna
29	7	cancer
29	7	kubernetes
29	7	single-cell-rna-seq
29	7	open-source
29	7	gwas
29	7	computational-chemistry
29	7	self-supervised-learning
29	7	bayer-not-classified
29	7	protein
29	7	database
29	7	servier
29	7	documentation
29	7	modules
29	7	tables
29	7	proteins
29	7	cpp
29	7	gene-expression
29	7	client
29	7	meta-repo
29	7	component
29	7	gradle
29	7	anndata
30	6	graph
30	6	awesome-list
30	6	chemoinformatics
30	6	pipeline
30	6	scrna-seq
30	6	computational-biology
30	6	graphs
30	6	listings
30	6	hta
30	6	health-economic-evaluation
30	6	3rd-party
30	6	denovo-assembly
30	6	sequence-analysis
30	6	genetics
30	6	zarr
30	6	plugin
30	6	cli
30	6	jar
30	6	ice
30	6	taxonomy
30	6	fastq
31	5	git
31	5	computer-vision
31	5	contrastive-learning
31	5	ontology
31	5	alignment
31	5	geometry
31	5	ai
31	5	neural-networks
31	5	reinforcement-learning
31	5	denovo-design
31	5	digital-pathology
31	5	testing
31	5	simulation
31	5	multi-omics
31	5	javascript
31	5	awesome
31	5	pharmaceuticals
31	5	analysis
31	5	data-analysis
31	5	postgresql
31	5	julia
31	5	reproducibility
31	5	dataset
31	5	health-economics
31	5	microscopy
31	5	terraform
31	5	bohan
31	5	api
31	5	obofoundry
31	5	ngff
31	5	ome-files
31	5	kmer
31	5	muon
31	5	mudata
31	5	pretraining
31	5	taxid
31	5	taxdump
32	4	core-services
32	4	human-cell-atlas
32	4	containers
32	4	life-sciences
32	4	opensource
32	4	cicd
32	4	workflows
32	4	omics
32	4	antibody
32	4	drug
32	4	drug-design
32	4	representation-learning
32	4	transfer-learning
32	4	deep-neural-networks
32	4	jupyter-notebook
32	4	tensorflow
32	4	dataviz
32	4	parser
32	4	convolutional-neural-networks
32	4	web
32	4	lifescience
32	4	awesome-lists
32	4	julia-language
32	4	optimization
32	4	docker-compose
32	4	biopython
32	4	bioinformatics-pipeline
32	4	survival-analysis
32	4	data-visualization
32	4	proteomics
32	4	validation
32	4	protein-design
32	4	molecular-simulation
32	4	molecular-dynamics
32	4	single-cell-genomics
32	4	physics
32	4	library
32	4	environment--development
32	4	embl-ebi
32	4	scanpy
32	4	cloud
32	4	quality-control
32	4	chembl
32	4	k-mer
32	4	rare-disease
32	4	conda
32	4	image
32	4	ome-zarr
32	4	lib
32	4	example
32	4	ansible-role
32	4	zeroc
32	4	idr
32	4	motif-discovery
32	4	illumina
32	4	cross-platform
33	3	website
33	3	tcga
33	3	community
33	3	book
33	3	stan
33	3	test-automation
33	3	nodejs
33	3	sql
33	3	drug-discovery-knowledge-graph
33	3	nlp
33	3	natural-language-processing
33	3	graph-neural-network
33	3	coverage
33	3	recommender-system
33	3	artificial-intelligence
33	3	bayesian
33	3	generative-ai
33	3	deeplearning
33	3	aws
33	3	llm
33	3	toolkit
33	3	deprecated
33	3	go
33	3	graph-neural-networks
33	3	evidence-synthesis
33	3	typescript
33	3	pathology
33	3	github
33	3	lifesciences
33	3	ebiology
33	3	biology-ai
33	3	package
33	3	spark
33	3	natural-products
33	3	sequence
33	3	variational-autoencoder
33	3	cite-seq
33	3	autoencoder
33	3	metabolism
33	3	big-data
33	3	genome
33	3	phylogenetics
33	3	outputs
33	3	reporting
33	3	statistical-engineering
33	3	utils
33	3	check
33	3	template
33	3	logging
33	3	synthetic-data
33	3	ubuntu
33	3	project-management
33	3	cancer-genomics
33	3	viewer
33	3	apm-0007239
33	3	diffusion-models
33	3	optics
33	3	scientific-publications
33	3	terraform-provider
33	3	platform-enablement
33	3	workflow-engine
33	3	bu--dept-diagnostics-tools
33	3	environment--production
33	3	infrastructure
33	3	gpu
33	3	webpack
33	3	nextflow
33	3	django
33	3	cwl
33	3	owl
33	3	ontologies
33	3	genome-graph
33	3	fm-index
33	3	variant-calling
33	3	biomedicine
33	3	html
33	3	benchmarking
33	3	continuous-integration
33	3	histone-modifications
33	3	encode
33	3	whole-slide-imaging
33	3	bioimaging
33	3	command
33	3	docs
33	3	nginx
33	3	jenkins
33	3	maven
33	3	ssh
33	3	training
33	3	ome-tiff
33	3	pypi
33	3	jekyll
33	3	profile-search
33	3	sequence-search
33	3	mmseqs
33	3	science
33	3	batch
33	3	medical-imaging
33	3	fasta
33	3	vcf
33	3	editing
33	3	taxonkit
34	2	cran
34	2	blog
34	2	quarto
34	2	retired-package
34	2	statistics
34	2	brms
34	2	roxygen2
34	2	quality
34	2	helm
34	2	helm-charts
34	2	metrics
34	2	uptime-monitor
34	2	status-page
34	2	upptime
34	2	workshop
34	2	rinpharma
34	2	pharmaverse
34	2	sparql
34	2	target-prediction
34	2	biomedical-text-mining
34	2	transformer
34	2	humanness
34	2	quantum-chemistry
34	2	algorithm
34	2	segmentation
34	2	smiles
34	2	polypharmacy
34	2	smiles-strings
34	2	deep-chemistry
34	2	shiny-apps
34	2	explainable-ai
34	2	explainable-ml
34	2	explainability
34	2	ddi
34	2	drug-target-interactions
34	2	gnn
34	2	ml
34	2	molecule-generation
34	2	qsar
34	2	qsar-models
34	2	molecular-docking
34	2	scikit-learn
34	2	keras
34	2	qupath
34	2	sonarqube
34	2	bcf
34	2	components
34	2	neural-network
34	2	tutorial
34	2	nlp-machine-learning
34	2	security
34	2	security-automation
34	2	templates
34	2	eslint
34	2	prettier
34	2	bayesian-methods
34	2	clinical-trial
34	2	pharmaceutical-development
34	2	neo4j
34	2	swift
34	2	networking
34	2	mathematics
34	2	csv
34	2	data-engineering
34	2	network-analysis
34	2	security-tools
34	2	certificates
34	2	decision-making
34	2	sapiens
34	2	differential-equations
34	2	conversion
34	2	dynamical-systems
34	2	clinical
34	2	generative-model
34	2	scientific
34	2	h5ad
34	2	c-plus-plus
34	2	rdkit
34	2	nextflow-pipeline
34	2	angular
34	2	python3
34	2	microbial-genomics
34	2	breseq
34	2	genomediff
34	2	research
34	2	devtools
34	2	images
34	2	table
34	2	utilities
34	2	data-model
34	2	pii
34	2	presidio
34	2	pip
34	2	action
34	2	repository
34	2	yaml
34	2	cost-effectiveness
34	2	cost-effectiveness-analysis
34	2	somatic-variants
34	2	gruntworks
34	2	cc-us03b0096
34	2	confluence
34	2	command-line
34	2	molecular-modeling
34	2	mental-health
34	2	alphafold2
34	2	protein-sequence
34	2	protein-structure-prediction
34	2	biomedical
34	2	mass-spectrometry
34	2	vision-transformer
34	2	reproducible-research
34	2	interoperability
34	2	biomolecular-simulation
34	2	free-energy-calculations
34	2	bu--dept-data-platform
34	2	owner--hichamazimani
34	2	phenomics
34	2	gtex
34	2	solrcloud
34	2	jest
34	2	babel
34	2	enzyme
34	2	expression-atlas
34	2	fetch
34	2	highcharts
34	2	ebi
34	2	anatomy
34	2	django-rest-framework
34	2	mgnify
34	2	comparative-genomics
34	2	jupyter
34	2	common-workflow-language
34	2	cwl-workflow
34	2	cwl-descriptions
34	2	cobs
34	2	cwl-description
34	2	transcriptome
34	2	toolbox
34	2	knowledge-management
34	2	drug-targets
34	2	surechembl
34	2	human-phenotype-ontology
34	2	enrichment-analysis
34	2	benchmark
34	2	format-converter
34	2	collaboration
34	2	cran-r
34	2	preprocessing
34	2	napari-plugin
34	2	jekyll-site
34	2	omero-import
34	2	plugins
34	2	reveal-js
34	2	help
34	2	model
34	2	ftp
34	2	vsftpd
34	2	anonymous-ftp
34	2	io
34	2	minio
34	2	octave
34	2	ldap
34	2	dependencies
34	2	install
34	2	reboot
34	2	fluentd
34	2	backup
34	2	s3
34	2	playbook
34	2	platform
34	2	centos7
34	2	openstack
34	2	feedback
34	2	slack
34	2	presentation
34	2	software-carpentry
34	2	compression
34	2	rundeck
34	2	graphql
34	2	sequence-clustering
34	2	blast
34	2	simd
34	2	chip-seq
34	2	scala
34	2	script
34	2	overlap
34	2	duplication
34	2	trimming
34	2	filtering
34	2	qc
34	2	deduplication
34	2	somatic
34	2	virus
34	2	unique
34	2	gene
34	2	fusion
34	2	ctdna
34	2	sam
34	2	bam
34	2	cram
34	2	spatial-analysis
34	2	scvi-tools
34	2	multimodal-omics-analysis
34	2	ai4science
34	2	retrieval
34	2	foundation-model
34	2	self-supervised
34	2	molecular-graph
34	2	lca
34	2	lineage
34	2	gtdb
34	2	windows
34	2	scaled-minhash
34	2	perl
34	2	profile
34	2	cami
35	1	docker-image
35	1	bioconductor-containers
35	1	api-client
35	1	vignette
35	1	nci
35	1	stickers
35	1	vagrant
35	1	saltstack
35	1	data-structure
35	1	mutations
35	1	copynumber
35	1	working-group
35	1	guidelines
35	1	hacktoberfest2022
35	1	code-search
35	1	r-packages
35	1	git-hook
35	1	data-access
35	1	book-base
35	1	book-release
35	1	conference
35	1	svn2git
35	1	bioconductor-dockers
35	1	bioconductor-packages
35	1	nci-itcr
35	1	mc-stan
35	1	mmrm
35	1	ae-reporting
35	1	type-hints
35	1	linter
35	1	risk-assessment
35	1	mobile-apps
35	1	builds
35	1	dsu-fabric
35	1	charts
35	1	webdriverio
35	1	quorum
35	1	peers
35	1	admiral
35	1	devops
35	1	toxicology
35	1	r-shiny-app
35	1	cdisc-send
35	1	linkeddata
35	1	knowledgegraph
35	1	pre-clinical
35	1	conformance-checks
35	1	gds
35	1	phewas
35	1	mixed-model
35	1	genetic-associations
35	1	drug-target-prioritization
35	1	opencpu
35	1	oracledb
35	1	augmentation
35	1	histopathology
35	1	knowledge-graph-completion
35	1	knowledge-graph-embeddings
35	1	knowledge-graph-embedding-models
35	1	attention
35	1	patent-data
35	1	antibody-sequence
35	1	immunogenicity-prediction
35	1	antibody-design
35	1	machinelearning
35	1	knowledge
35	1	mapping
35	1	kg
35	1	ontology-alignment
35	1	biological-networks
35	1	alan
35	1	echocardiography
35	1	visual-transformers
35	1	torch
35	1	geometric-deep-learning
35	1	drug-interaction
35	1	drug-pair
35	1	torchdrug
35	1	evaluation
35	1	personalization
35	1	rank
35	1	ranking
35	1	recommender
35	1	recall
35	1	recsys
35	1	metric
35	1	precision
35	1	mrr
35	1	rsquared
35	1	ner
35	1	entity-extraction
35	1	dictionary-based-ner
35	1	link-prediction
35	1	subgraph
35	1	node-embedding
35	1	graph-auto-encoder
35	1	ui
35	1	lime
35	1	explainable-artificial-intelligence
35	1	xai
35	1	shapley
35	1	shap
35	1	shapley-decomposition
35	1	explainable
35	1	shapley-value
35	1	shapley-q-value
35	1	shapley-additive-explanations
35	1	owen-value
35	1	drug-repurposing
35	1	relational-learning
35	1	gcn
35	1	drug-drug-interaction
35	1	drug-combination
35	1	decagon
35	1	drug-synergy
35	1	synergy-prediction
35	1	tabular-data
35	1	multi-view-learning
35	1	forecasting
35	1	graph-algorithms
35	1	graphml
35	1	monte-carlo-tree-search
35	1	chemical-reactions
35	1	reaction-informatics
35	1	compchem
35	1	hyperparameter-optimization
35	1	optuna
35	1	clustering
35	1	matched-molecular-pair
35	1	non-additive-effects
35	1	recurrent-neural-networks
35	1	siamese-neural-network
35	1	seq2seq
35	1	molecular-optimization
35	1	multi-property-optimization
35	1	auto-ml
35	1	whole-genome-sequencing
35	1	non-coding-variants
35	1	text-generation
35	1	text-to-sql
35	1	rag
35	1	credentials
35	1	artifactory
35	1	oidc
35	1	bayer-restricted
35	1	bayer-reg-undefined
35	1	maps
35	1	geospatial
35	1	openlayers
35	1	bayer
35	1	graphneuralnetwork
35	1	zero-shot-learning
35	1	few-shot-learning
35	1	large-scale-classification
35	1	text-classification
35	1	geoserver
35	1	styles
35	1	sld
35	1	geostyler
35	1	mocking
35	1	stubbing
35	1	golang-package
35	1	antibodies
35	1	tensorflow2
35	1	simclr
35	1	toy-dataset
35	1	conrec
35	1	attention-pooling
35	1	finegrained
35	1	represenation-learning
35	1	transformers
35	1	data-to-text
35	1	quaternion
35	1	graph-classification
35	1	neural-message-passing
35	1	graph-representation-learning
35	1	hypercomplex
35	1	extended-connectivity-fingerprints
35	1	automation
35	1	scanning
35	1	devsecops
35	1	bayer-no-classification
35	1	beat-not-set
35	1	bayer-classification-required
35	1	bayer-reg-required
35	1	eslint-config
35	1	eslintrc
35	1	real-world-evidence
35	1	multiassayexperiment
35	1	personalis
35	1	prettier-config
35	1	prettierrc
35	1	causal-inference
35	1	time-to-event
35	1	estimand
35	1	mcmc-methods
35	1	principal-stratification
35	1	weighting
35	1	extrapolation
35	1	pediatrics
35	1	tipping-point
35	1	prior-elicitation
35	1	bayesian-borrowing
35	1	anomaly-detection
35	1	deep-features
35	1	drug-toxicity
35	1	one-class-classfiation
35	1	config
35	1	vscode
35	1	editorconfig
35	1	shared
35	1	i18n
35	1	ionic
35	1	veterinary
35	1	goat
35	1	social-entrepreneurship
35	1	making-more-health
35	1	bayesian-statistics
35	1	oncology
35	1	dose-escalation
35	1	trial-simulation
35	1	blrm
35	1	histology-images
35	1	lrl
35	1	node
35	1	facts
35	1	graph-database
35	1	cell-painting
35	1	web-components
35	1	custom-elements
35	1	frond-end
35	1	r-programming
35	1	new-jersey
35	1	maternal-health
35	1	maternal-mortality
35	1	ios
35	1	network-monitoring
35	1	urlsession
35	1	guppy
35	1	french
35	1	france
35	1	biotechnology
35	1	excel
35	1	table-extraction
35	1	semi-structured-data
35	1	logs
35	1	teams
35	1	audit-logs
35	1	audit-log
35	1	troubleshooting
35	1	microsoft-teams
35	1	disconnects
35	1	csv-converter
35	1	data
35	1	data-mining
35	1	csv-format
35	1	csv-reading
35	1	csv-parser
35	1	csv-reader
35	1	csv-parsing
35	1	routes
35	1	whois
35	1	route
35	1	network-visualization
35	1	tcp-ip
35	1	whois-lookup
35	1	network-security
35	1	whois-information
35	1	tcpip
35	1	shadow-it
35	1	tls
35	1	cryptography
35	1	certificate
35	1	domain
35	1	x509
35	1	expiration
35	1	expiry
35	1	security-scanner
35	1	tls-certificate
35	1	x509-parser
35	1	x509certificates
35	1	gen-ai
35	1	assistant-cli
35	1	experimental-design
35	1	oasis
35	1	humanization
35	1	packaging-tool
35	1	ectd
35	1	reaction-network
35	1	strategic-planning
35	1	scientific-machine-learning
35	1	json
35	1	stochastic-processes
35	1	rlanguage
35	1	search-engine
35	1	web-application
35	1	search-algorithm
35	1	metaprogramming
35	1	multiple-testing
35	1	clinical-trial-design
35	1	multiplicity
35	1	rshiny-application
35	1	group-sequential-designs
35	1	graphical-approach
35	1	synthetic-biology
35	1	bidirectional-lstm
35	1	deepbgc
35	1	pfam2vec
35	1	biosynthetic-gene-clusters
35	1	embeddings
35	1	language-model
35	1	bert
35	1	residence-time-distribution
35	1	process-development
35	1	covalent-organic-frameworks
35	1	local-gaussian-processes
35	1	biological-sequences
35	1	probabilistic-graphical-models
35	1	denoising-algorithm
35	1	crispr-screen
35	1	rnaseq
35	1	salmon
35	1	rnaseq-pipeline
35	1	meta-analysis
35	1	historical-data
35	1	headless
35	1	audit
35	1	profiling
35	1	shinyloadtest
35	1	shinytest2
35	1	communication
35	1	oop
35	1	inheritance
35	1	shiny-modules
35	1	tidy-operators
35	1	sequential-data
35	1	pattern-search
35	1	interactive-machine-learning
35	1	unsupervised
35	1	moa
35	1	npm
35	1	wasm
35	1	node-js
35	1	molecule-visualization
35	1	molecule-viewer
35	1	microbiology
35	1	fermentation
35	1	fermentation-process
35	1	fed-batch
35	1	flux
35	1	modeling
35	1	downstream-analysis
35	1	scientific-computing
35	1	systems-biology
35	1	thermodynamics
35	1	multivariate
35	1	tfa
35	1	cobrapy
35	1	fba
35	1	tmfa
35	1	multitfa
35	1	reconstruction-team
35	1	curve-fitting
35	1	growth-curves
35	1	flask
35	1	sqlalchemy
35	1	mongoengine
35	1	peewee
35	1	flask-extensions
35	1	microservices
35	1	rpc
35	1	python-3
35	1	circos-graphs
35	1	python-wrapper
35	1	circos
35	1	biojs
35	1	d3js
35	1	angularjs
35	1	phylogenetic-trees
35	1	neighbor-joining
35	1	gff3
35	1	genbank
35	1	sequence-ontology
35	1	bayesianoptimization
35	1	sensors
35	1	wearables
35	1	actigraphy
35	1	imu-sensor
35	1	genetic-algorithm
35	1	global-optimization
35	1	qsp
35	1	ode-model
35	1	metropolis-hastings
35	1	monte-carlo-sampling
35	1	biological-modeling
35	1	quantitative-systems-pharmacology
35	1	virtual-population
35	1	acceptance-rejection
35	1	box
35	1	researchkit
35	1	catalog
35	1	slice
35	1	rna-seq-analysis
35	1	general-purpose
35	1	rocker
35	1	format
35	1	matrix
35	1	r-package-automation
35	1	plot
35	1	summarization
35	1	widgets
35	1	merge
35	1	transform
35	1	renv
35	1	staged-dependencies
35	1	system-dependencies
35	1	traceability
35	1	covtracer
35	1	disk-space
35	1	release
35	1	simulation-engine
35	1	multistate-models
35	1	joint-models
35	1	pkgdown
35	1	installer
35	1	dependency-management
35	1	spellcheck
35	1	clinical-trial-analysis
35	1	stable
35	1	low-code
35	1	license-checking
35	1	high-dimensional-data
35	1	nonparametrics
35	1	treatment-effects
35	1	biomarkers
35	1	pkgdown-template
35	1	conferences
35	1	abstracts
35	1	hex-stickers
35	1	roadmap
35	1	simulation-study
35	1	bayesian-dynamic-borrowing
35	1	psborrow2
35	1	hla
35	1	kir
35	1	immunogenetic
35	1	protein-sequences
35	1	topological-data-analysis
35	1	lung
35	1	copd
35	1	minkowski-functionals
35	1	hrct
35	1	parametric-response-mapping
35	1	structural-biology
35	1	structure-prediction
35	1	architecture
35	1	component-architecture
35	1	snakemake
35	1	expression
35	1	hbv
35	1	genotyping
35	1	snakemake-workflow
35	1	randomization
35	1	design-of-experiments
35	1	pandas-dataframe
35	1	stata-files
35	1	spss
35	1	sas7bdat
35	1	readstat
35	1	innersource
35	1	software-quality
35	1	scorecard
35	1	scores
35	1	inner-source
35	1	innersource-advisor
35	1	gitlab
35	1	configuration-management
35	1	gitlab-api
35	1	configuration-as-code
35	1	high-throughput-sequencing
35	1	tmb
35	1	spatialomics
35	1	spatial-biology
35	1	cc-6cl900
35	1	apm-0074337
35	1	cc-f40ccl2041
35	1	cms
35	1	headless-cms
35	1	feedbacks
35	1	dashboard-component
35	1	apm-0070143
35	1	ap059750
35	1	automate
35	1	molecular-simulations
35	1	htmd
35	1	feature-engineering
35	1	data-cleaning
35	1	lasagne
35	1	theano
35	1	transcription-factor-binding
35	1	transcriptional-regulatory-network
35	1	protein-dna-interactions
35	1	signaling-networks
35	1	protein-protein-interaction
35	1	metric-learning
35	1	3d-models
35	1	information-extraction
35	1	probabilistic-models
35	1	emnlp2020
35	1	semi-supervised
35	1	adversarial-training
35	1	cancer-imaging-research
35	1	cancer-imaging
35	1	multiplexed-imaging
35	1	maximum-mean-discrepancy
35	1	rna-velocity
35	1	aging
35	1	cell-atlas
35	1	puzzle
35	1	question
35	1	paradox
35	1	measurement
35	1	hardware
35	1	hardware-designs
35	1	simulations
35	1	physics-simulation
35	1	collision-cross-section
35	1	approved-drugs
35	1	bioactivity
35	1	ensemble-model
35	1	kgem
35	1	ethnobotany
35	1	network-biology
35	1	causal-networks
35	1	mechanism-of-action
35	1	neural-network-potentials
35	1	etl
35	1	gcp
35	1	icml-2023
35	1	tier-1
35	1	nanopore
35	1	c
35	1	alternative-nuclease
35	1	computational-physics
35	1	cplusplus
35	1	owner--jeanfrancoisreboud
35	1	differential-expression
35	1	owner--squad-dse
35	1	healthcare
35	1	differential-privacy
35	1	federated-learning
35	1	computational-pathology
35	1	bu--ptlm
35	1	owner--thibaultfy
35	1	bu--dept-rnd
35	1	owner--csaillard
35	1	owner--matthieublottiere
35	1	vuex-store
35	1	vuex-stores
35	1	vuex
35	1	gflownet
35	1	masked-autoencoder
35	1	infrastructure-as-code
35	1	yaml-configuration
35	1	similarity-analysis
35	1	materials-science
35	1	protocol
35	1	scrnaseq
35	1	totem-ti
35	1	course-materials
35	1	tcell
35	1	scrna-seq-analysis
35	1	solr
35	1	schemas
35	1	batch-correction
35	1	bulk-rna-seq
35	1	microarray-data-analysis
35	1	coveralls
35	1	npm-package
35	1	travis-ci
35	1	number-format
35	1	widget
35	1	t-sne
35	1	async-await
35	1	tsne-plot
35	1	ebi-visual-framework
35	1	ebi-species
35	1	testing-tools
35	1	async
35	1	svg
35	1	resource
35	1	jsonapi
35	1	backbone
35	1	viruses
35	1	sourmash
35	1	notebooks
35	1	rlang
35	1	shinyproxy
35	1	jupyterlab-extension
35	1	biohackeu22
35	1	metagenomics-toolkit
35	1	metabolomics
35	1	protein-annotation
35	1	nanopore-sequencing
35	1	metagenomic-analysis
35	1	metagenomic-classification
35	1	metagenomic-data
35	1	amplicon-pipeline
35	1	metagenomic-pipeline
35	1	wgs-analysis
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35	1	podman
35	1	hug-api
35	1	jobs
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35	1	diamond
35	1	marine
35	1	transdecoder
35	1	phmmer
35	1	data-release
35	1	semantic-web
35	1	knowledge-representation
35	1	owl-api
35	1	biomedical-informatics
35	1	biomedical-applications
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35	1	datasets-tagged
35	1	unichem
35	1	rest
35	1	rest-client
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35	1	molecular-structures
35	1	spring-boot
35	1	spring-batch
35	1	voldemort
35	1	less
35	1	single-page-app
35	1	css3
35	1	angular4
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35	1	hmtl5
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35	1	typeahead
35	1	ngx-bootstrap
35	1	identifiers-org
35	1	suffix-array
35	1	pangenome
35	1	spliced-alignment
35	1	pan-genome
35	1	population-genetics
35	1	sequence-assembly
35	1	hi-c
35	1	k-mer-counting
35	1	phenome
35	1	clinical-genomics
35	1	snps
35	1	statistical-genetics
35	1	magma
35	1	single-cell-omics
35	1	parallel-computing
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35	1	qtl
35	1	summary-statistics
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35	1	standardisation
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35	1	celltypes
35	1	wiki
35	1	dockerhub
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35	1	team-management
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35	1	gene-expression-omnibus
35	1	peak-calling
35	1	github-api
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35	1	skills-management
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35	1	next-generation-sequencing
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35	1	lightsheet
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35	1	codecs
35	1	schema
35	1	specification
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35	1	ome-model
35	1	ecosystem
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35	1	devs
35	1	util
35	1	gui
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35	1	omero-training
35	1	sdk
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35	1	ome-zarr-converter
35	1	guide
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35	1	s3-gateway
35	1	sec
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35	1	fiji
35	1	examples
35	1	metakit
35	1	poi
35	1	mdb
35	1	archive
35	1	upload
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35	1	agent
35	1	postgres
35	1	tools
35	1	kernel
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35	1	nic
35	1	jmx
35	1	cadvisor
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35	1	redis
35	1	samba
35	1	partition
35	1	storage-device
35	1	sudoers
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35	1	ssl-certificate
35	1	certificate-key
35	1	log-monitor
35	1	django-prometheus
35	1	nfs-share
35	1	nfs-mount
35	1	user
35	1	rsync-server
35	1	version-control
35	1	lvm
35	1	rotatelogs
35	1	firewall
35	1	iptables
35	1	ansible-galaxy
35	1	production
35	1	playbooks
35	1	rjava
35	1	posix
35	1	ome-ngff
35	1	compose
35	1	ansible-roles
35	1	haproxy
35	1	file-format
35	1	development
35	1	matlab
35	1	volume
35	1	py-conda
35	1	websockets
35	1	public
35	1	email-tracker
35	1	redmine
35	1	gpfs
35	1	read-only
35	1	munin
35	1	mysql
35	1	mariadb
35	1	omego
35	1	planning
35	1	rfc
35	1	writing
35	1	reading
35	1	pixeldata
35	1	python-bindings
35	1	distributed
35	1	celery
35	1	pom
35	1	ssl
35	1	sending-notifications
35	1	proceedings
35	1	supplemental-materials
35	1	jace
35	1	virtualenv
35	1	python-virtualenv
35	1	centos
35	1	aspera-client
35	1	munin-node
35	1	debug
35	1	object-storage
35	1	helm-chart
35	1	status
35	1	dashboard
35	1	gh-pages
35	1	awstats
35	1	reference-implementation
35	1	common
35	1	k8s
35	1	turbojpeg
35	1	cmake
35	1	apacheds
35	1	dockerfile
35	1	rsync
35	1	sftp
35	1	slides
35	1	gre
35	1	reveal-md
35	1	image-data-repository
35	1	university-of-dundee
35	1	sphinx-theme
35	1	hdf5
35	1	codec
35	1	configuration
35	1	sysadmin
35	1	daemon
35	1	irc
35	1	pyspark
35	1	reactjs
35	1	vitejs
35	1	turborepo
35	1	european-bioinformatics-institute
35	1	slick
35	1	sangria
35	1	gitbook
35	1	tracker
35	1	gene-prediction
35	1	eukaryotes
35	1	gene-discovery
35	1	linclust
35	1	vue
35	1	colabfold
35	1	foldseek
35	1	structure-search
35	1	electron
35	1	crispr
35	1	host-pathogen
35	1	sequence-assembler
35	1	metatranscriptomics
35	1	annotation
35	1	assembly
35	1	hh-suite
35	1	profile-profile-search
35	1	hhsearch
35	1	hhpred
35	1	viterbi
35	1	hhblits
35	1	eqtl
35	1	eqtl-mapping
35	1	reverse-regression
35	1	trans-eqtl
35	1	dca
35	1	contact-prediction
35	1	motif-analysis
35	1	ngs-analysis
35	1	bamms
35	1	webserver
35	1	bamm
35	1	rna
35	1	par-clip
35	1	spacy
35	1	custom-pipes
35	1	scientific-documents
35	1	gatk
35	1	application
35	1	executor
35	1	hpc
35	1	wdl
35	1	ga4gh
35	1	workflow-description-language
35	1	workflow-execution
35	1	review
35	1	manuscript
35	1	manubot
35	1	unsupervised-learning
35	1	variational-autoencoders
35	1	classifier
35	1	methodology
35	1	pancancer
35	1	gene-sets
35	1	network
35	1	hetnet
35	1	msigdb
35	1	biobombe
35	1	chromatin-profiles
35	1	pacbio
35	1	hifi-read
35	1	pre-training
35	1	protein-representation-learning
35	1	score-matching
35	1	score-based-generative-modeling
35	1	step-functions
35	1	ppi
35	1	rna-structure-prediction
35	1	dti
35	1	protein-folding
35	1	biocomputing
35	1	graph-networks
35	1	protein-docking
35	1	molecule-design
35	1	conditional-random-fields
35	1	camelyon16
35	1	deep-neural-network
35	1	deepvariant
35	1	learning
35	1	engineering
35	1	machine
35	1	mri
35	1	mri-reconstruction
35	1	fastmri
35	1	fastmri-challenge
35	1	fastmri-dataset
35	1	avro
35	1	parquet
35	1	uniprot
35	1	adapter
35	1	splitting
35	1	umi
35	1	merging
35	1	polyg
35	1	filter
35	1	duplex
35	1	consensus
35	1	deep-sequencing
35	1	sequencing-error
35	1	sequencing-noise
35	1	duplex-sequencing
35	1	viral
35	1	2019-ncov
35	1	coronavirus
35	1	covid-19
35	1	covid
35	1	sars-cov-2
35	1	hcov
35	1	mngs
35	1	microbial-sequences
35	1	meta-genomics
35	1	viral-infectious-diseases
35	1	cosmic
35	1	alk
35	1	eml4
35	1	ros1
35	1	ret
35	1	detection
35	1	mutation
35	1	variant
35	1	error
35	1	adapter-trimming
35	1	unique-reads
35	1	post-dedup
35	1	accurate-frequency
35	1	pattern
35	1	cfdna
35	1	integrity
35	1	pe
35	1	consistence
35	1	paired-end
35	1	identical
35	1	split
35	1	index
35	1	demultiplexing
35	1	demux
35	1	dual-index
35	1	splitter
35	1	slicer
35	1	file-splitter
35	1	file-cutter
35	1	file-slicer
35	1	liquid-biopsy
35	1	liquid
35	1	htslib
35	1	java-api
35	1	image-analysis
35	1	spatial-transcriptomics
35	1	squidpy
35	1	perturbation
35	1	visualize-data
35	1	napari
35	1	spatial-omics
35	1	variational-bayes
35	1	deep-generative-model
35	1	multimodal-data
35	1	scatac-seq
35	1	governance
35	1	package-management
35	1	usegalaxy
35	1	software
35	1	hail
35	1	bioconda
35	1	multiqc
35	1	vizualisation
35	1	seqera
35	1	qt
35	1	image-processing
35	1	registration
35	1	neuroimaging
35	1	vtk
35	1	itk
35	1	national-institutes-of-health
35	1	medical-image-computing
35	1	3d-printing
35	1	3d-slicer
35	1	tractography
35	1	image-guided-therapy
35	1	nih
35	1	computed-tomography
35	1	kitware
35	1	tcia-dac
35	1	variation-graph
35	1	geneset-enrichment
35	1	geneset-enrichment-analysis
35	1	material
35	1	drugs
35	1	group
35	1	symmetry
35	1	molecules
35	1	3d
35	1	crystals
35	1	invariance
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35	1	3d-structures
35	1	structure
35	1	motif
35	1	conversation
35	1	secondary-structure
35	1	peptide
35	1	small-molecule
35	1	chatgpt
35	1	chatgpt3
35	1	drug-editing
35	1	domain-feedback
35	1	clip
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35	1	moleculestm
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35	1	md
35	1	ligand
35	1	binding-affinity
35	1	protein-ligand-binding
35	1	generation
35	1	representation
35	1	sde
35	1	conformation
35	1	diffusion
35	1	stochastic-differential-equation
35	1	group-equivariant-neural-network
35	1	reflection-antisymmetric
35	1	large-language-model
35	1	protein-editing
35	1	molecular-geometries
35	1	denoising-diffusion
35	1	point-clouds
35	1	controllable-generation
35	1	string
35	1	energy-based-model
35	1	ppi-networks
35	1	multitask-learning
35	1	chembl-string
35	1	n-gram
35	1	n-gram-graph
35	1	adversarial
35	1	robustness
35	1	global-minimum
35	1	multi-task-learning
35	1	negative-transfer
35	1	set
35	1	union
35	1	intersection
35	1	difference
35	1	unik
35	1	wavefront
35	1	wfa
35	1	tsv
35	1	manipulation
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35	1	safe
35	1	batch-rename-files
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35	1	usability
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35	1	syncmer
35	1	streaming
35	1	pretty
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35	1	pretty-table
35	1	ncbi-taxonomy
35	1	taxonomic-changes
35	1	txid
35	1	bit-pack
35	1	kmers
35	1	shell
35	1	parallel
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35	1	linux
35	1	programing-language
35	1	sketch
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35	1	virome
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35	1	taxonomic-profiling
35	1	syncmers
35	1	bigsi
35	1	fracminhash
35	1	cluster
35	1	submit
35	1	qsub
35	1	cluster-files
35	1	ictv
35	1	bwt
35	1	burrows-wheeler-transform
35	1	mock-virome
35	1	simhash
35	1	serialization
35	1	kmer-file
35	1	asynchronous
35	1	buffered
35	1	sbatch
35	1	slurm
35	1	megenomics
35	1	simulated-comunities
35	1	strobemers
35	1	ncbi
35	1	accession
35	1	hashing
35	1	xxhash
35	1	wyhash
35	1	nthash
35	1	reusable
35	1	restful
35	1	count-min-sketch
35	1	large-language-models
35	1	ai-for-science
35	1	instruction-tuning
35	1	molecule-optimization
35	1	instruction-datasets
35	1	dicom
35	1	ecg
35	1	medical
35	1	volume-rendering
35	1	dicom-images
35	1	dicom-rt
35	1	dicomweb
35	1	weasis
35	1	dicom-pr
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35	1	export-dicom
35	1	dicom-web-viewer
35	1	dicom-image
35	1	dicom-seg
35	1	multiplanar-reconstruction
35	1	dicom-image-viewer
35	1	dataflow
35	1	fbp
35	1	scientific-workflows
35	1	scipipe

Footnotes

1. This page was generated with the topgh open source software on 2024-06-09 ↩