✂️ ⚡ Rapid haploid variant calling and core genome alignment

Rapid large-scale prokaryote pan genome analysis

Application of pan-genome for population

simuG: a general-purpose genome simulator

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

Improve the quality of a denovo assembly by scaffolding and gap filling

Graph-based mapping of long sequences, noisy or HiFi.

Genome annotation pipeline

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

Collection of scripts for bacterial genomics

CoGe (Comparative Genomics) Platform

Genome Annotation Without Nightmares

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

충남대학교 김준 연구실 튜토리얼

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

Multilocus sequence typing by blast using the schemes from PubMLST

Identify phage regions in bacterial genomes for masking purposes

Toolkit for preparing genomes for submission to NCBI

starfish: a modular toolkit for giant mobile element annotation

Define regions in the genome