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genomics

Here are 147 public repositories matching this topic...

greenelab / deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

review deep-learning genomics neural-networks manuscript manubot

Updated Dec 25, 2022
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Benjamin-Lee / deep-rules

Ten Quick Tips for Deep Learning in Biology

data-science machine-learning bioinformatics deep-learning genomics biology computational-biology manuscript manubot

Updated Nov 30, 2021
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linsalrob / ComputationalGenomicsManual

Robs manual for the computational genomics and bioinformatics class.

bioinformatics genomics online-class

Updated Nov 12, 2024
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biowasm / biowasm

WebAssembly modules for genomics

javascript bioinformatics genomics webassembly awk jq sed grep bedtools samtools bowtie2 minimap2 seqtk

Updated Nov 1, 2024
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ga4gh / benchmarking-tools

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

benchmarking genomics standardization ga4gh reference-materials genome-sequencing variant-calls

Updated Mar 19, 2021
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stephenturner / qqman

An R package for creating Q-Q and manhattan plots from GWAS results

cran gwas r genomics

Updated Mar 18, 2024
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B-UMMI / chewBBACA

BSR-Based Allele Calling Algorithm

bioinformatics genomics mlst bacteria cgmlst outbreak-detection wgmlst bacterial-genome-analysis allele-calling bacterial-typing

Updated Nov 5, 2024
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jostmey / dkm

Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features

machine-learning genomics repertoire unstructured-data nonconforming-data tcell-receptors statistical-classifiers dkm

Updated May 16, 2023
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thierrygosselin / radiator

RADseq Data Exploration, Manipulation and Visualization using R

Updated Nov 6, 2024
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genome / bfx-workshop

A course on genomics and bioinformatics from WU

bioinformatics dataviz genomics analysis biology sequencing dna alignment rnaseq rna single-cell atacseq scrna chipseq

Updated Nov 11, 2024
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bobeobibo / phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage

Updated Jan 8, 2024
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genepattern / genepattern-server

The GenePattern Server web application

bioinformatics genomics reproducible-research genepattern

Updated Nov 12, 2024
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RKMlab / perf

PERF is an Exhaustive Repeat Finder

genomics genome simple repeats ssr biopython fasta sequence tandem microsatellites

Updated Apr 22, 2021
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iquasere / reCOGnizer

A tool for domain based annotation with databases from the Conserved Domains Database

annotation genomics protein fasta quantification functional-annotation cog-assignment

Updated Sep 20, 2024
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BIMSBbioinfo / netSmooth

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

bioinformatics genomics single-cell

Updated May 15, 2024
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wassermanlab / Variant_catalogue_pipeline

Variant catalogue pipeline

pipeline genomics nextflow vcf

Updated Aug 7, 2024
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Phillip-a-richmond / GenomeAnalysisModule

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

bioinformatics workshop genomics genome ubc vancouver dnaseq genetic bwamem bcchr richmond evidence2innovation short-read dna-seq bc-children-hospital genetic-counselling

Updated Nov 14, 2022
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ToledoEM / msigdf

Molecular Signatures Database (MSigDB) in a data frame

r genomics tidy-data tidyverse genes r-package geneset-enrichment msigdb geneontology gsea genesets reference-data genomics-data

Updated Oct 4, 2024
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astrazeneca-cgr-publications / JARVIS

JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes

genomics tensorflow deeplearning whole-genome-sequencing non-coding-variants

Updated Oct 28, 2024
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BIMSBbioinfo / pigx

Pipelines in genomics

snakemake genomics rnaseq guix dropseq bisulfite-sequencing chipseq

Updated Apr 7, 2022
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