Official git repository for Biopython (originally converted from CVS)
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Updated
Sep 11, 2024 - Python
Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Data intensive science for everyone.
Scripts to download genomes from the NCBI FTP servers
Python library to handle Gene Ontology (GO) terms
Python library to facilitate genome assembly, annotation, and comparative genomics
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Fast genome-wide functional annotation through orthology assignment
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Performant Pythonic GenomicRanges
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Structural variant toolkit for VCFs
A genome visualization python package for comparative genomics
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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