Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Tools to work with variant call format files

Genomic Data Retrieval with R

Gene set variation analysis

A collection of scripts and notes related to genomics and bioinformatics

Development repository for the Bioconductor package 'mixOmics '

A grammar of genomic data transformation

Visual self-service analytics platform for big omics data.

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

Genome wide orthology inference and dNdS estimation

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

Provide R access to the NCI Genomic Data Commons portal.

A small project to add ggplot2 extensions

Rapid standardisation and quality control of GWAS or QTL summary statistics

Detailed bioinformatics scripts and methods used in the NAM genome paper.

Find causal cell-types underlying complex trait genetics

Bioconductor package for management of multi-assay data

MSigDB gene sets for multiple organisms in a tidy data format

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.