subworkflows_bisulfite_qc.cwl
Travis CI User edited this page Feb 24, 2021
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Bisulfite QC tools
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| bam | File | |||
| reference | string | |||
| QCannotation | File | |||
| output_dir | string |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| QC_directory | Directory |
| Name | CWL Run |
|---|---|
| bisulfite_conversion | tools/bisulfite_qc_conversion.cwl |
| mapping_summary | tools/bisulfite_qc_mapping_summary.cwl |
| cpg_retention_distribution | tools/bisulfite_qc_cpg_retention_distribution.cwl |
| coverage_stats | tools/bisulfite_qc_coverage_stats.cwl |
| gather_to_sub_directory | tools/gather_to_sub_directory.cwl |