subworkflows_docm_cle.cwl

Documentation for docm_cle.cwl

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Detect Docm variants

Name	Type	Secondary Files
reference	['string', 'File']	['.fai', '^.dict']
tumor_bam	File	['^.bai']
normal_bam	File	['^.bai']
docm_vcf	File	['.tbi']
interval_list	File
filter_docm_variants	boolean

Name	Label	Description	Type	Secondary Files
docm_variants_vcf			File	['.tbi']

Name	CWL Run
GATK_haplotype_caller	tools/docm_gatk_haplotype_caller.cwl
bgzip	tools/bgzip.cwl
index	tools/index_vcf.cwl
decompose	tools/vt_decompose.cwl
docm_filter	tools/filter_vcf_docm.cwl
bgzip2	tools/bgzip.cwl
index2	tools/index_vcf.cwl