subworkflows_cram_to_bam_and_index.cwl

Documentation for cram_to_bam_and_index.cwl

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Overview

cram_to_bam workflow

Inputs

Name	Label	Description	Type	Secondary Files
cram			File	['^.crai']
reference			['string', 'File']	['.fai', '^.dict']

Outputs

Name	Label	Description	Type	Secondary Files
bam			File	['.bai']

Steps

Name	CWL Run
cram_to_bam	tools/cram_to_bam.cwl
index_bam	tools/index_bam.cwl