tools_cellranger_vdj.cwl
APipe Tester edited this page Jul 14, 2021
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Run Cell Ranger V(D)J
registry.gsc.wustl.edu/alex.paul/cellranger:6.0.0
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| fastq_directory | Array of directories containing fastq files | Directory[] | ||
| reference | Transcriptome reference compatible with input species and Cell Ranger VDJ | Directory | ||
| sample_name | Sample name, must be same as name specified in sample sheet in previous mkfastq step | string |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| out_dir | Directory |