tools_cnvnator.cwl
Travis CI User edited this page May 21, 2020
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Run CNVnator to calculate copy number variations in WGS samples
mgibio/cnvnator-cwl:0.4
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | BAM or CRAM input | File | ||
| bin_size | Bin size used to calculate coverage | int? | ||
| chromosomes | List of chromosomes to run CNVnator on | string[]? | ||
| reference | Reference used to generate the alignments | ['string', 'File'] | ['.fai'] | |
| sample_name | Sample name used for output file naming | string |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| root_file | File | |||
| cn_file | File |