tools_filter_sv_vcf_depth.cwl
APipe Tester edited this page Jul 14, 2021
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mgibio/bcftools-cwl:1.12
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| input_vcf | vcf file to filter | File | ||
| output_vcf_name | output vcf file name | string? | ||
| deletion_depth | Depth for deletions must be less than this cutoff to pass the filter. | double? | ||
| duplication_depth | Depth for duplications must be greater than this cutoff to pass the filter. | double? | ||
| vcf_source | source caller of the vcf input file | [{'type': 'enum', 'symbols': ['cnvnator', 'cnvkit', 'duphold']}] |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| filtered_sv_vcf | File |