tools_collect_hs_metrics.cwl
Travis CI User edited this page Oct 14, 2020
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collect HS metrics
broadinstitute/picard:2.23.6
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File | ['^.bai'] | ||
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| metric_accumulation_level | string | |||
| bait_intervals | File | |||
| target_intervals | File | |||
| per_target_coverage | boolean? | |||
| per_base_coverage | boolean? | |||
| output_prefix | string? | |||
| minimum_mapping_quality | int? | |||
| minimum_base_quality | int? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| hs_metrics | File | |||
| per_target_coverage_metrics | File? | |||
| per_base_coverage_metrics | File? |