subworkflows_mutect.cwl
Travis CI User edited this page Feb 24, 2021
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mutect parallel workflow
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| tumor_bam | File | ['^.bai', '.bai'] | ||
| normal_bam | File? | ['^.bai'] | ||
| interval_list | File | |||
| scatter_count | int | |||
| tumor_sample_name | string |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| unfiltered_vcf | File | ['.tbi'] | ||
| filtered_vcf | File | ['.tbi'] |
| Name | CWL Run |
|---|---|
| split_interval_list | tools/split_interval_list.cwl |
| mutect | tools/mutect.cwl |
| merge | tools/merge_vcf.cwl |
| index | tools/index_vcf.cwl |
| filter | subworkflows/fp_filter.cwl |