tools_duphold.cwl
Travis CI User edited this page May 21, 2020
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mgibio/duphold-cwl:0.1.5
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | aligned bam/cram file | File | ||
| output_vcf_name | output vcf file name | string? | ||
| reference | reference used to align bam | ['string', 'File'] | ['.fai', '^.dict'] | |
| snps_vcf | snps vcf file to annotate hom/het variant counts within sv | File? | ||
| sv_vcf | sv vcf file to annotate | File |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| annotated_sv_vcf | File |