tools_select_variants.cwl
Travis CI User edited this page Sep 14, 2020
·
5 revisions
This page is auto-generated. Do not edit.
SelectVariants (GATK 4.1.8.1)
broadinstitute/gatk:4.1.8.1
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| vcf | File | ['.tbi'] | ||
| interval_list | File? | |||
| exclude_filtered | boolean? | |||
| output_vcf_basename | string? | |||
| samples_to_include | include genotypes from this sample | string[]? | ||
| select_type | select only a certain type of variants | ['null', {'type': 'enum', 'symbols': ['INDEL', 'SNP', 'MIXED', 'MNP', 'SYMBOLIC', 'NO_VARIATION']}] |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| filtered_vcf | File | ['.tbi'] |