tools_smoove.cwl
APipe Tester edited this page Jul 14, 2021
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Run Smoove v0.2.7
brentp/smoove:v0.2.7
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bams | Array of bams to run through lumpy, can be single or small cohort | File[] | ||
| cohort_name | Used for naming the output file | string? | ||
| reference | Reference used to generate the bams | ['string', 'File'] | ['.fai', '^.dict'] | |
| exclude_regions | Bed file used to exclude regions | File? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| output_vcf | File | ['.csi'] |