tools_generate_fda_tables.cwl
APipe Tester edited this page Dec 12, 2022
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Script to create FDA-requested summary tables
python:3.7.4-slim-buster
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| table_file_name | string? | |||
| table_num | string | |||
| md5sum_file | File | |||
| fastqc_zips | File[] | |||
| aligned_metrics | File? | |||
| unaligned_metrics | File[]? | |||
| alignment_summary_metrics | File? | |||
| duplication_metrics | File? | |||
| insert_size_metrics | File? | |||
| hs_metrics | File? | |||
| rna_metrics | File? | |||
| flagstat | File? | |||
| unaligned_rna_table | File? | |||
| sequencing_platform | string? | |||
| sequencing_instrument | string? | |||
| sequencing_kit | string? | |||
| sequencing_type | string? | |||
| single_or_paired_end | string? | |||
| spike_in_error_rate | string? | |||
| source | string? | |||
| total_DNA | string? | |||
| reference_genome | string? | |||
| total_RNA | string? | |||
| RIN_score | string? | |||
| freq_normalization_method | string? | |||
| annotation_file | string? | |||
| sample_name | string? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| table | File |