subworkflows_fp_filter.cwl
Travis CI User edited this page Feb 24, 2021
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fp_filter workflow
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File | ['.bai', '^.bai'] | ||
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| vcf | File | ['.tbi'] | ||
| variant_caller | string | |||
| sample_name | string? | |||
| min_var_freq | float? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| unfiltered_vcf | File | ['.tbi'] | ||
| filtered_vcf | File | ['.tbi'] |
| Name | CWL Run |
|---|---|
| sanitize_vcf | tools/vcf_sanitize.cwl |
| normalize_variants | tools/normalize_variants.cwl |
| decompose_variants | tools/vt_decompose.cwl |
| index | tools/index_vcf.cwl |
| fp_filter | tools/fp_filter.cwl |
| fp_bgzip | tools/bgzip.cwl |
| fp_index | tools/index_vcf.cwl |
| hard_filter | tools/select_variants.cwl |