Official code repository for GATK versions 4 and up
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Updated
Jun 29, 2024 - Java
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Official code repository for GATK versions 4 and up
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
The Chemistry Development Kit
Java utilities for Bioinformatics
A powerful open source data warehouse system
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Pegasus Workflow Management System - Automate, recover, and debug scientific computations.
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
Global Biotic Interactions provides access to existing species interaction datasets
Bio4j abstract model and general entry point to the project
Our VM/Docker sharing infrastructure and management component
MOLGENIS - for scientific data: management, exploration, integration and analysis.
OWLTools
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Annotation of VCF variants with functional impact and from databases (executable+library)
Various utilities regarding Levenshtein transducers. (Java)
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Interpretation of proteomics identification results
an implementation of NSGA-II in java