Versatile open-source tool for microbiome analysis
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Updated
Sep 11, 2024 - C++
Versatile open-source tool for microbiome analysis
SeqAn's official repository.
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
A robust and fast clustering method for amplicon-based studies
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
tidy processing of biological sequences in R
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
DuckDB Extension for reading and writing FASTA and FASTQ Files
BioC++ Input/Output library
Extract sequences from a fastx file given a subsequence or identifier
Translate nucleotides (DNA & RNA) to aminoacid using IUPAC ambiguity codes
C++ compressed FASTA sequence cache backed by the combined video memory of system to decrease RAM usage.
Basic seed-and-extend DNA sequence read aligner
Combinatorial algorithms in bioinformatics - Searching motifs in biological sequences
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