Official code repository for GATK versions 4 and up
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Updated
Oct 19, 2024 - Java
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Official code repository for GATK versions 4 and up
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
A powerful open source data warehouse system
The Chemistry Development Kit
Java utilities for Bioinformatics
MOLGENIS - for scientific data: management, exploration, integration and analysis.
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Pegasus Workflow Management System - Automate, recover, and debug scientific computations.
Revolutionizing DNA analysis and making it accessible to all through innovative ML-powered analysis and interpretive tools.
Annotation of VCF variants with functional impact and from databases (executable+library)
OWLTools
Projeto Checkpoint para a disciplina de "Domain Driven Design com Java", para os cursos de Engenharia de Software - FIAP/SP, 2024. Por: Professor Fellipe Souto.
An app store for scientific workflows, tools, notebooks, and services
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
an implementation of NSGA-II in java
The BridgeDb Library source code
PDV: an integrative proteomics data viewer
Various utilities regarding Levenshtein transducers. (Java)
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Bio4j abstract model and general entry point to the project