Block 4 Autoregister

Block 4 - Autoregister V0

(./) copied from working--needs to be made generic

Description

This block batch autoregisters images contained in lsupport/PICTLIST.TXT.

Assumptions

• You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
• You are a member of the group OREX\spc
• You have set up a skeleton directory in the following format:

 /SPC_Test/F3G-Nav/
                   ORex/
                            DATA/
                   base/
                            IMAGEFILES/
                            SHAPEFILES/
                   lsupport/
                   orig/
                   results/
                   test/

• You have completed the processing steps in Block 1 - Setup Directory
• You have populated the orig/ directory with test-specific images following the steps in:
• Block 2 - Ingest
• ??????
• You have populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of images to register
• You have registered images listed in lsupport/PICTLIST.TXT-forRegistering.TXT following these steps in How to Register Images - Batch

User inputs

• testID - Name of the F3 test directory (for example, 'F3E-Limbs')
• dirID - Name of sub-directory in which to work (e.g. 'orig', or 'test')
• blockID - User-specified identifier for typescript textfile name (for example, 'Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages')

Procedure

1. Initial inputs

testID=F3G-Nav
dirID=orig
blockID=Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages

2. Set-up

cd /SPC_Test/$testID/$dirID/
script
date
pwd
ls -l

3. Set-up batch autoregister files

cp lsupport/PICTLIST-forRegistering.TXT make_script.in
cat make_script.in
cp scripts/make_scriptA.seed .
cat make_scriptA.seed
make_scriptA
ls -l

4. Batch autoregister images

ls -l /usr/local/bin/autoregister
nohup sh run_script.b &

5. Monitor progress

ls -l *.INN *.OOT

6. Check results

(./) how to handle variance within?

sh support/logEvalP.sh
cat logResults.txt 
cat lowImg.txt
cat redo.txt
convert TESTFILES/*.pgm TESTFILES/*.jpg
open TESTFILES/*.jpg
cp TESTFILES/*.jpg ~/send

7. Fix uncorrelated images

.......

8. Clean directory

sh rem_script.b
rm TESTFILES/*
rm nohup.out

9. Complete procedure

exit
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}

---

(Compiled by DL)