bobs_with_Erics_notes

This is an older, but more elaborate script from Bob with Eric's notes on a few things.

ch SHAPEFILES
../bin/triax
.290 .290 .290
512
SPHERE.TXT

cp SPHERE.TXT SHAPEL.TXT
cd ..
................................................
Combine previous shape vectore and limb vectors
with shape first and removing first line of each
file.  Save as VECS.TXT.
      SHAPEL likes to be Q=64
      SHAPEX likes to be Q=16
................................................

bin/dumber
SHAPEFILES/SHAPEL.TXT
SHAPEFILES/SHAPEX.TXT
4
y

   /bin/cp SHAPEFILES/SHAPEX.TXT LIMBVECS.TXT
   vi LIMBVECS.TXT


/bin/cp LIMBVECS.TXT VECS.TXT

vi SHAPEFILES/SHAPEX.TXT
vi VECS.TXT

................................................
Run vecs2cube to get noisy shape model.
Look at model with view_shape.
................................................
bin/vecs2cube
VECS.TXT
16
SHAPEFILES/SHAPEX.TXT

bin/shape2maps
SHAPEFILES/SHAPEX.TXT
bin/view_shape

................................................
Save new shape as VECS.TXT, removing first line
................................................

/bin/cp -f  SHAPEFILES/SHAPEX.TXT VECS.TXT
vi VECS.TXT

................................................
Smooth model with vecs2shape and dumb down to q=64
Look at q=64 model with view_shapes
................................................

bin/vecs2shape
VECS.TXT
512 13
SHAPEFILES/SHAPE.TXT

bin/dumber
SHAPEFILES/SHAPE.TXT
SHAPEFILES/SHAPE0.TXT
8
y

bin/shape2maps
SHAPEFILES/SHAPE0.TXT
bin/view_shape

................................................
At this point REGISTER can be run for a sampling of the
images with a seed make_scriptR.seed such as:

s
.3
0
n
q
END

to see if any set of images needs to be re-registered.

We can also run:

bin/Display
PICNM
0
n
y
n
gc TEMPFILE.pgm

in order to display the limb points that have been found
in the image PICNM.
................................................

................................................
Copy q=64 model to SHAPEL.TXT, reference for LIMBER.
Adjust LIMBER.IN if needed and run LIMBER.
Check coverage when done.
   LIMBER:  Default shape is SHAPE0 unless redefined in LIMBER.IN
................................................

/bin/cp SHAPEFILES/SHAPE0.TXT SHAPEFILES/SHAPEL.TXT

vi LIMBER.IN

bin/LIMBER

bin/coverage
0
0,100
y
convert coverage_g.pgm coverage_g.jpg

................................................
Go to beginning and repeat
................................................