ISIStoPhase

ISIS to Phase

• NOTE: We generate the emission data first since that shell script first initializes the LROC NAC EDR, which is then ready for incidence and I/F. That script can be found here. ISIStoEmission
• The shell script below generates phoP.IMG.

file=$1
out=$2

if [ '$file' == '' ]
then
        echo "Usage $0 <calibratedIMG> <last4L>"
fi

if [ '$out' == '' ]
then
        echo "Usage $0 <calibratedIMG> <last4L>"
fi

echo "File: $file"
echo "Outfile: $out"

if [ 'two' == 'two' ]
then

        phocube FROM=$file.cub TO=phoP-$out.cub EMISSION=false I=false PHASE=true LAT=false LON=false
        isis2pds FROM=phoP-$out.cub to=phoP-$out.img BITTYPE=u16bit STRETCH=linear MINPER=0 MAXPER=100

        rm phoP-$out.cub
fi

calFile=`echo $file | tr E C`
echo "calFile: $calFile"

• Generating the IMG takes awhile, so we have a wrapper to run all the images at once. NOTE: This wrapper requires directory setup. Each image is placed in its own folder; the folder name is the last 5 digits of the NAC, plus the L or R for left/right. The wrapper should be placed in the directory containing all the image folders.

file=$1
list=`cat $file`


for i in $list
do

  strLength=`echo $i | wc | cut -c23-24`
  if [ "$strLength" != "13" ]
  then
    if [ "$strLength" != "14" ]
    then
      echo "string length not supported"
      exit
    fi
  fi

  if [ "$strLength" == "13" ]
  then
    lastFive=`echo $i | cut -c6-11`
  fi
  if [ "$strLength" == "14" ]
  then
    lastFive=`echo $i | cut -c7-12` 
  fi


  cd img-$lastFive  
  ../ISISp.sh $i $lastFive
  cd ..

done

• With the emission IMG in hand, now attach the original image header. The source code is mergePhase.c
• Below is a wrapper to run the "merge" software.

file=$1
list=`cat $file`

cd /Users/JW/LDAP16/IMG_RG2

for i in $list
do

  strLength=`echo $i | wc | cut -c23-24`
  if [ "$strLength" != "13" ]
  then
    if [ "$strLength" != "14" ]
    then
      echo "string length not supported"
      exit
    fi
  fi

  if [ "$strLength" == "13" ]
  then
    lastFive=`echo $i | cut -c6-11`
    echo $lastFive
  fi
  if [ "$strLength" == "14" ]
  then
    lastFive=`echo $i | cut -c7-12` 
    echo $lastFive
  fi


echo "$i.IMG" > emmTmp
echo "/Users/JW/LDAP16/CubesReinerGamma2/img-$lastFive/phoP-$lastFive.img" >> emmTmp
~/Dropbox/Ingenii/src/t.mergePhase < emmTmp

\mv -f MP* /Users/JW/LDAP16/CubesReinerGamma2/working/NEW_IMAGES/

done

rm emmTmp