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Library Of Compound Cures
This library is for someone who does not know us and has no reason to trust us.
A patient reading a label. A prescriber who wants to know where else a strand of RNA could bind. A
regulator asking whether a claim was measured or merely stated. A laboratory deciding where to
point a bench. None of them should have to take our word for anything, and in this library none of
them does: every figure on this page is printed by a program in reproduce/, and the command that
prints it is written beside the figure.
It is a library, not a study. Studies close; a library grows. Entries arrive as evidence arrives, and each one is admitted by a law rather than by a person β there is no reviewer here to persuade and no committee to convince.
What is in it today: exact off-target maps for the nucleic-acid medicines the public registry publishes a usable sequence for, a genome-wide map for every guide RNA in that registry, and an exact discrimination court over seventeen tumour types asking what actually recovers a published master-regulator set. Five entries. Two named things it does not have.
Nothing enters this library without a reproducible measurement. An entry must name itself with a
public identifier the law checks rather than trusts, state what was measured with a quantity,
name a program in reproduce/ that produces it, list figures that each match a line of that
program's output, carry either a seal that program actually prints or the explicit token
NONE_PRINTED, take a grade from this wiki's ontology that the present evidence supports, say in
its own words what it refuses to claim, name the observation that would overturn it, give a command
a stranger runs from a clean clone, and carry the not-advice line inside the entry so it travels
when a row is copied out. That is the per-entry half β fifteen clauses, E0 to E14. The other half
holds every entry at once: nine clauses, L1 to L9, publishing a distinct count over the identity
field beside the row count, always, with integer ceilings the library declares in advance and the
law tests as count(most repeated value) β€ declared β per value, never as a ratio, because a ratio between two
integers is where a float enters a program that had none.
The full law: The library admission law. The law itself is the
program reproduce/library-admission-law.swift β 2,495 lines, Swift 6.4, zero float on every
decision path, 71 control arms passing in three directions. Beyond the two halves there is one
federation clause, F1, which asks the only question neither half can: is one entry filed in
two different libraries? No per-library clause can see it, because no per-library clause ever
holds two libraries at once β which is why the three libraries are graded in a single run and
never one at a time.
Why the second half exists. A generative pipeline in this same programme reported 37,910
validated discoveries and contained five distinct molecules. Every row carried a valid
molecule and every per-row check that ran on it was right to pass it; the emitting loop read
seeds[i % len(seeds)], so the row count was the loop bound. No per-item validator can see that,
because no per-item validator ever holds two items at once. That is why this page publishes a row
count and a distinct count side by side and will never publish one without the other.
| terminal | what it means here |
|---|---|
| ADMITTED | every clause is satisfied on evidence present at this grading. It does not mean true, safe, or recommended β read the entry's own refusal lines |
| REFUSED | a clause is violated, and the clause is named. There is no state between admitted and refused |
| NOT_KNOWN | a clause cannot be decided because its evidence is not present here. The entry waits, by name, and is neither in the library nor thrown out of it |
An open slot is a fourth thing and deliberately not a terminal: a held entry has evidence that exists somewhere, a slot has evidence nowhere. Slots are named below, count in no axis, and gate on nothing. Naming a slot is how a library says what it is missing instead of quietly not having it.
xcrun swiftc -O -swift-version 5 reproduce/library-admission-law.swift -o /tmp/lal
/tmp/lal --library library/proteins --library library/compounds --library library/materials \
--reproduce reproduce --evidence /tmpGrade all three libraries in one command. F1 β no entry filed in two libraries β is a relation
between libraries, and a run given one library cannot answer it: it prints
F1_NO_ENTRY_FILED_TWICE NOT_KNOWN and exits 2, which is the honest answer and is not a
clearance. The first published version of these three pages each carried a clean table produced by
a separate single-library run, and the clause that refused the combined run could not be reached by
any of the three. That is fixed in the law, and this is the command it is fixed with.
--evidence is where out_<program>.txt transcripts live; validate.sh writes them to /tmp,
which is the default. Exit 0 all admitted, 1 something refused, 2 something held, 3 the
control arm failed and nothing was graded.
Measured 2026-09-07, all three libraries together: 15 ADMITTED Β· 1 HELD Β· 0 REFUSED, every
per-library clause holding, and F1 clear over 12 distinct triples. The seal is path-independent
by construction β filesystem paths are printed and never sealed, because a seal that moves with
the checkout directory indicts a correct reproduction.
CONTROL ARM 71/71 PASS 43 must REFUSE Β· 19 must ADMIT Β· 9 must HOLD
programs in reproduce/ 89
LIBRARY PROTEINS -> ADMITTED 6 files 5 admitted 1 held 0 refused
LIBRARY COMPOUNDS -> ADMITTED 8 files 4 admitted 4 held 0 refused
LIBRARY MATERIALS -> ADMITTED 6 files 6 admitted 0 held 0 refused
F1_NO_ENTRY_FILED_TWICE ok β no triple appears in more than one of the 3 libraries
TRANSCRIPT SEAL sha256 fa0c43d8cc38a2ad66214bac3a82c3aa27cb86cedd310640ed88ce0d9fb9584b
sealed bytes 33,668
exit 2
The seal moves when the census moves; the verdict does not, and the difference is worth a
sentence rather than a footnote. The program census β programs in reproduce/ 89 β is inside the
sealed transcript, because what programs were available is evidence about the grading. A clone
holding a different number of programs prints a different seal. That is content disagreeing, not a
broken reproduction: the per-entry and per-library verdicts above it are what must match.
Eight entry blocks follow, reproduced verbatim from the canonical entry files in
library/compounds/. The checker grades one entry per file, so grade the library directory β
this page is the reading surface, not the graded object. Clause L9 makes "reproduced verbatim" a
gate rather than a promise: it compares the fenced blocks on this page against the blocks in that
directory as multisets and refuses the library if they differ. Before L9 existed the two agreed,
and that was a fact about one hour rather than something anyone checked.
Each block is the schema. Each carries its own grade, its own refusal lines and its own not-advice line, so that a row copied out of this library arrives somewhere else still carrying what it refuses to say.
An approved-sequence antisense oligonucleotide against GFAP, screened against every transcript GENCODE v50 publishes. The whole point of the entry is the shape of the answer: two perfect matches, both in the intended gene, and then nothing at all until you drop two mismatches. The gap between 20/20 and 17/20 is empty. That emptiness is a measurement, and it is the one a prescriber would want.
The burden figure is the one that needs its control read alongside it: 324 off-target windows at 16/20 or better outside GFAP, against a composition-matched control median of 787. The real strand is quieter than scrambles of its own composition. A count without that control would be a number nobody could interpret.
LIBRARY COMPOUNDS
IDENTITY_KIND UNII
IDENTITY AXQ9493NT2
TITLE Zilganersen off-target map, exact, whole human transcriptome
MEASURED On the real approved sequence against GENCODE v50: 2 perfect 20/20 windows, both in GFAP; 0 at 19/20 and 0 at 18/20; 11 sites named at 17/20; 324 off-target windows at 16/20 or better outside GFAP against a composition-matched control median of 787. 670,670 transcripts, one integer per window, no cutoff inside the arithmetic.
PROGRAM zilganersen-offtarget-whole-transcriptome
FIGURE perfect 20/20 : 2, both in GFAP
FIGURE 19/20 and 18/20 : 0 and 0
FIGURE off-target burden at 16/20 or better, outside GFAP : 324
FIGURE composition-matched control median at the same threshold : 787
SEAL edcb277ddea44820502b6446b00ed8bdcfdb08835d6785fdee7d1b370420bbaa
GRADE MEASURED
SOURCE NCATS GSRS, UNII AXQ9493NT2 β the sequence is public and nothing here is behind a login
WHERE_THE_LAW_LIVES reproduce/zilganersen-offtarget-whole-transcriptome.swift
REFUSED not a safety verdict on the medicine, and not a finding about any patient
REFUSED not a claim that any listed site is bound, cleaved or clinically relevant in a person. Complementarity is where binding is possible, never where it happens
REFUSED not a comment on the trial, the endpoint or the approval
FALSIFIER the same sequence against the same GENCODE v50 digest returning a different count at any of the four thresholds, or a perfect window outside GFAP
REPRODUCE cd reproduce && xcrun swiftc -O -swift-version 5 zilganersen-offtarget-whole-transcriptome.swift -o /tmp/run && curl -sL <gencode v50 transcripts fasta> | gunzip -c | /tmp/run
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-07
The eleven sites at 17/20 are named in the program's output β XYLB, ENSG00000239572,
ADAM20P1, ENSG00000293223 β because a bench that wants to check one needs the name, not the
count.
The same instrument, a different medicine, and the reason it is here is that it was asked independently and reached the same place twice: three perfect windows, all in LPA. The registry-wide atlas below reaches LPA for this strand by a different route, and agreement between two screens that did not share a code path is worth more than either alone.
LIBRARY COMPOUNDS
IDENTITY_KIND UNII
IDENTITY LSO9H7UZ90
TITLE Pelacarsen off-target map, exact, whole human transcriptome
MEASURED 3 perfect 20/20 windows, all in LPA, over 670,670 transcripts and 1,467,336,203 windows against GENCODE v50. At 17/20 or better outside LPA: LPAL2, TMEM254-AS1, LINC02606, LINC01065, ISM1.
PROGRAM pelacarsen-offtarget-whole-transcriptome
FIGURE perfect 20/20 windows : 3, all in LPA
FIGURE 17/20 or better, not LPA : LPAL2, TMEM254-AS1, LINC02606, LINC01065, ISM1
FIGURE 513de7e9db6556df1895bfce4cb4d69e4816d7b45b75bee1dc8452335c2c7757
SEAL 513de7e9db6556df1895bfce4cb4d69e4816d7b45b75bee1dc8452335c2c7757
GRADE MEASURED
SOURCE NCATS GSRS, UNII LSO9H7UZ90
WHERE_THE_LAW_LIVES reproduce/pelacarsen-offtarget-whole-transcriptome.swift
REFUSED not a safety verdict on the medicine and not a finding about any patient
REFUSED not a claim that LPAL2 or any named transcript is bound in a person
FALSIFIER an independent screen of the same strand against the same transcriptome digest reaching a different perfect-window count or a different named set at 17/20
REPRODUCE cd reproduce && xcrun swiftc -O -swift-version 5 pelacarsen-offtarget-whole-transcriptome.swift -o /tmp/run && curl -sL <gencode v50 transcripts fasta> | gunzip -c | /tmp/run
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-07
This is the coverage entry, and coverage is the claim it makes. The strands were enumerated from
the registry, not from a list anyone remembered: 742 substances of class nucleicAcid, 740
carrying a sequence, and those whose every subunit falls between 8 and 60 nt giving 472 strands
across 350 substances.
Of those, 187 had a target measured from the transcriptome β found by complementarity, not read off a label. 285 had no perfect complement anywhere and were therefore never screened for off-targets. Those 285 are ABSENT from the map. They are not clean, and the entry says so in its own refusal line, because a strand that was not screened and a strand that was screened and found quiet are two different answers and this library never prints them alike.
LIBRARY COMPOUNDS
IDENTITY_KIND CONTENT_DIGEST
IDENTITY 321b36c694b89a45bb81668d7ea62b9c85cf0b3087e18bba586f43b230274b08
DIGEST_OF the merged seal of the eight strand shards of the registry-wide off-target atlas
TITLE Every nucleic-acid substance the public registry publishes a usable sequence for
MEASURED 472 strands across 350 substances, enumerated from the registry rather than from a list anyone remembered: 742 substances of class nucleicAcid, 740 carrying a sequence, and those whose every subunit falls in 8 to 60 nt. 187 strands had a target measured FROM the transcriptome; 285 had no perfect complement anywhere and were therefore not screened for off-targets.
PROGRAM oligo-offtarget-atlas-exact
FIGURE 321b36c694b89a45bb81668d7ea62b9c85cf0b3087e18bba586f43b230274b08
FIGURE 472 strands across 350 substances
FIGURE 187 strands had a measured target; 285 had no perfect complement anywhere
SEAL 321b36c694b89a45bb81668d7ea62b9c85cf0b3087e18bba586f43b230274b08
GRADE MEASURED
SOURCE NCATS GSRS, class nucleicAcid, enumerated in full
WHERE_THE_LAW_LIVES reproduce/oligo-offtarget-atlas-exact.swift
REFUSED the 285 refused strands are ABSENT from the map, never scored as clean. A strand with no perfect complement was not screened, and that is a different answer from a strand that was screened and found quiet
REFUSED not a safety ranking. This entry publishes coverage and targets, not an ordering of substances by risk
REFUSED not a claim about any approval, label or trial
FALSIFIER a strand in the registry inside the 8 to 60 nt range that this enumeration omits, or a measured target that a second independent screen does not reach
REPRODUCE cd reproduce && xcrun swiftc -O -swift-version 5 oligo-offtarget-atlas-exact.swift -o /tmp/run && curl -sL <gencode v50 transcripts fasta> | gunzip -c | /tmp/run ../corpus/oligo-atlas/all_nucleicacid.tsv
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-07
The run was sharded by strand across eight processes, each reading the entire transcriptome, so no statistic crosses strands and sharding changes no number. The published seal is the sha256 of the eight shard seals in order, which is why a single process cannot print it β the program says so in its own output rather than leaving a reader to discover it.
The program also corrects an earlier revision of its own window count in public, in its output: a figure once printed as a property of the run was one arbitrary strand's count. Window counts are per strand length, and the program now says that where the number used to be.
Fifteen guide RNAs, found by the canonical SpCas9 scaffold rather than by name β every one of the
742 nucleicAcid substances in the registry was scanned for it, and fifteen carry it. Screened
against 3,099,750,718 bases at 304,796,751 NGG PAM sites on both strands.
The finding is stated at full magnitude because it is there: all fifteen guides found a
zero-mismatch site, thirteen had exactly one in the whole genome, every guide had zero sites at one
mismatch, and thirteen of fifteen had zero at two. On the question this instrument answers β how
many places in the genome match this guide, exactly β these are clean guides, and the count is not
an opinion. The fifteen are named in the program's own output beside the UNII each sequence came
from, and they include the guide of an approved therapy people are alive because of today β
exagamglogene autotemcel, UNII L28RZ5CC6K. Which of the fifteen is quietest at three and four
mismatches is a per-guide question, and it is answered by the per-guide table rather than by this
summary.
1,718 windows containing an N were set aside and counted, never folded into either bucket. An
N is neither a match nor a mismatch, and a library that quietly rounds it into one is a library
whose totals cannot be checked.
LIBRARY COMPOUNDS
IDENTITY_KIND CONTENT_DIGEST
IDENTITY 487b4f81de2d24bd0bb11ecd1d8d42778e3a5d91b9edb33627c86dcc8df34980
DIGEST_OF the sealed transcript of the genome-wide guide screen over 15 registry guides
TITLE Genome-wide off-target map for every guide RNA the public registry publishes
MEASURED 15 guides, found by the canonical SpCas9 scaffold rather than by name, against 3,099,750,718 bases: 304,796,751 NGG PAM sites examined on both strands, 1,718 windows containing an N set aside rather than scored. All 15 guides found a zero-mismatch site and 13 had exactly one in the whole genome; every guide had 0 sites at one mismatch and 13 of 15 had 0 at two.
PROGRAM crispr-genome-offtarget-exact
FIGURE 487b4f81de2d24bd0bb11ecd1d8d42778e3a5d91b9edb33627c86dcc8df34980
FIGURE 304796751 NGG PAM sites
FIGURE All 15 guides found a zero-mismatch site; 13 had exactly one in the whole genome.
FIGURE L28RZ5CC6K
SEAL 487b4f81de2d24bd0bb11ecd1d8d42778e3a5d91b9edb33627c86dcc8df34980
GRADE MEASURED
SOURCE NCATS GSRS, all 742 nucleicAcid substances scanned for the scaffold; 15 carry it
WHERE_THE_LAW_LIVES reproduce/crispr-genome-offtarget-exact.swift
REFUSED not a per-guide safety verdict. This entry publishes the map at the granularity the program prints, and no claim about one named guide beyond what appears there
REFUSED an N window is neither a match nor a mismatch. The 1,718 are set aside and counted, never folded into either bucket
REFUSED not a claim that any site is cut in a person. A PAM plus complementarity is where a cut is possible, never where it happens
FALSIFIER a 16th guide in the registry carrying the canonical scaffold, or a different site count for the same assembly digest
REPRODUCE cd reproduce && xcrun swiftc -O -swift-version 5 crispr-genome-offtarget-exact.swift -o /tmp/run && curl -sL <GRCh38 primary assembly fasta> | gunzip -c | /tmp/run ../corpus/crispr-atlas/guides_all.tsv
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-07
The full per-guide map, with coordinates and strands at four mismatches or fewer, is published on the CRISPR page β because that list is exactly where a laboratory would start if it wanted to check a guide experimentally, and publishing the summary without it would be publishing the reassuring half.
This is the entry that changes what a reader should do next, and it is a negative result stated at full magnitude rather than apologised for.
Across seventeen TCGA tumour types, ranking regulators by regulon size alone β never reading the patient expression counts at all β recovers the published master-regulator set at least as significantly as ranking them by expression in eleven of them. Expression adds discrimination in five. One recovers nothing by either arm and is published as such, by name, rather than dropped. Ties: zero.
The arithmetic is an exact integer hypergeometric upper tail. C(100,50) is computed as
100891344545564193334812497256, not as a float that agrees to fifteen digits, and the program's
self-test proves the tail equals its own denominator at s=0 before it grades anything.
LIBRARY COMPOUNDS
IDENTITY_KIND CONTENT_DIGEST
IDENTITY d0051d7a19daa0cb7f1a3d4f7be7433af73401bbf25fe41079f6409c066fee5a
DIGEST_OF the sealed verdict transcript of the exact discrimination court over 17 TCGA tumour types
TITLE Topology against expression, by exact hypergeometric tail, 17 tumour types
MEASURED Ranking regulators by regulon SIZE ALONE recovers the published master-regulator set at least as significantly as ranking them by patient expression in 11 of 17 tumour types; expression adds discrimination in 5; 1 recovers nothing by either arm and is published as such. Exact integer hypergeometric upper tails, zero float on the decision path.
PROGRAM mr-topology-vs-expression-exact
FIGURE d0051d7a19daa0cb7f1a3d4f7be7433af73401bbf25fe41079f6409c066fee5a
FIGURE TOPOLOGY_EXPLAINS: 11 of 17 tumour types
FIGURE EXPRESSION_ADDS : 5 of 17 tumour types
FIGURE SELFTEST PASS
SEAL d0051d7a19daa0cb7f1a3d4f7be7433af73401bbf25fe41079f6409c066fee5a
GRADE MEASURED
SOURCE GDC open RNA-seq integer counts and the published regulon files, both public
WHERE_THE_LAW_LIVES reproduce/mr-topology-vs-expression-exact.swift
REFUSED not a claim that the published master-regulator sets are wrong. It is a statement about what these numbers support and nothing wider
REFUSED not a claim about any patient, any treatment or any outcome
REFUSED not a drug pairing. The eleven named drug pairs published in prose on the study page are NOT in this entry, because no program in reproduce/ prints them and a stranger cannot re-derive them from a clean clone. They are named as an open slot in this library's manifest instead
FALSIFIER the same regulon files and the same integer counts returning a different verdict for any of the 17 cohorts, or a tail probability that disagrees in exact arithmetic
REPRODUCE cd reproduce && xcrun swiftc -O -swift-version 5 mr-topology-vs-expression-exact.swift -o /tmp/run && /tmp/run
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-07
The seventeen cohorts are printed one per line with pool size, set size, both arms' hit counts and
both exact tails β from 2.685e-29 down to 1.000e+0 β so a reader can disagree with the verdict
on any single cohort while holding the same numbers we do.
This is the entry with the most direct bench handoff in any of the three libraries, and it is also the entry that proves the admission law is not decoration.
Across fifteen scored tumour types, 44,850 pairs were scored per type from the 300 most-inverting single agents under a frozen additive law. Eleven of fifteen clear a vehicle-pair control, a self-pair control, and a random-gene-set null at 0 of 200 draws β where 0 of 15 cleared for any single agent among 20,308 compounds. The four that do not clear carry the fewest observable regulators in the corpus: 8, 8, 9 and 9, which is a statement about the power of this test on those cohorts and never about those cancers.
And for one day this entry could not exist. These pairs were published on 2026-09-06 in prose. The compound names appeared in exactly one place in the entire public repository β the study page itself. No program printed them, no corpus carried them. This library's own law refused them under E3 and E4 on first contact with the real corpus, and named them as an open slot with the condition for entry written down: they enter the day a program prints them. That program was written the same day, and this entry is its output. The slot closed the day it opened, and the law refused two further defects in this very entry before admitting it β an identity digest that no FIGURE line claimed, and an invented manifest key.
LIBRARY COMPOUNDS
IDENTITY_KIND CONTENT_DIGEST
IDENTITY d0117523ff3b950a0741de281671c0bd977f8dc003f41972f2bfac2f50994d74
DIGEST_OF the sealed transcript of the reader that prints the eleven pairs from the screen's own per-cohort results
TITLE Eleven compound pairs clearing three controls where no single agent among 20,308 cleared any
MEASURED Across 15 scored tumour types, 44,850 pairs scored per type from the 300 most-inverting single agents under a frozen additive law. 11 of 15 clear a vehicle-pair control, a self-pair control, and a random-gene-set null at 0 of 200 draws. 0 of 15 cleared for any single agent among 20,308 compounds. The four that do not clear carry the fewest observable regulators in the corpus: 8, 8, 9 and 9.
PROGRAM study26-combination-pairs-exact
FIGURE estradiol + AMG-208
FIGURE estrone + BMS-387032
FIGURE olaparib + ursodeoxycholyltaurine
FIGURE HMN-214 + saracatinib
FIGURE drospirenone + alpelisib
FIGURE XMD-892 + NVP-BGJ398
FIGURE THE PAIRS THAT CLEAR ALL THREE CONTROLS β 11 of 15
FIGURE d0117523ff3b950a0741de281671c0bd977f8dc003f41972f2bfac2f50994d74
SEAL d0117523ff3b950a0741de281671c0bd977f8dc003f41972f2bfac2f50994d74
GRADE MEASURED
SOURCE Study 26 S3-COMBINATION, per-cohort results pinned in corpus/study-26-combination/
WHERE_THE_LAW_LIVES reproduce/study26-combination-pairs-exact.swift
REFUSED not efficacy. A signature-inversion score is an arithmetic statement about expression ranks of landmark genes, and nothing about a dose, a mechanism, or a patient follows from it
REFUSED not a claim that any pair helps anyone. Whether two compounds act additively in a cell, at a dose, in a person, and whether the combination is tolerable at all, is a laboratory and clinical question this program has not asked
REFUSED not a re-run of the screen. This program is a faithful reader of the screen's sealed output and says so on every path; re-deriving those bytes from LINCS is a separate and larger reproduction
REFUSED not a finding about the four that did not clear. Their result is a statement about the power of this test on those cohorts, never about those cancers
FALSIFIER a cohort file whose published gain does not equal best_pair minus best_single, which the program's own known-case check reports before emitting any table; or a re-run from LINCS reaching different pairs under the same frozen law
REPRODUCE ( cd corpus/study-26-combination && shasum -a 256 -c SHA256SUMS ) && xcrun swiftc -O -swift-version 5 reproduce/study26-combination-pairs-exact.swift -o /tmp/s26c && /tmp/s26c < /dev/null
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-07
The reader carries a known-case check that runs before any table: the published gain must equal
best_pair β best_single on all fifteen rows. Changing a single digit in one result file makes
it name the disagreeing row and emit no table and no seal. Given no corpus it refuses rather
than printing an empty result, and its seal is byte-identical from any directory.
The atlas above answers where a strand can pair. It cannot answer whether that burden is unusual, and alone it decides nothing: any 20-mer has hundreds of near-complementary windows in a corpus of 1.47 billion, for the same reason any twenty-letter string turns up in a large enough library. This entry is the comparison β every screened strand against sixteen permutations of its own bases, the same multiset with none of the design.
This slot was named empty on 2026-09-07 and filled on 2026-09-08. The manifest carried it as an open slot, in the library's own words, while the screen was still running: no program, no transcript, no seal, nothing to hold. It is an entry now because a program prints it.
The result the bench should read first is not the two successes. It is that 17 undesigned sequences, drawn from the corpus by a fixed rule and screened exactly as a medicine is, put the registry's numbers in a scale β and none of the seventeen is below its own controls either.
LIBRARY COMPOUNDS
IDENTITY_KIND CONTENT_DIGEST
IDENTITY 2d74f5c676d51d45df178f9fed7840729bd87633ae8e5a9104383f6fbd7c3fd1
DIGEST_OF the sealed transcript of the registry-wide specificity ranking, over every strand, every threshold, every rank interval and every complete histogram
TITLE Every registry strand ranked against sixteen rearrangements of its own bases
MEASURED 472 registry strands and 17 undesigned constructed 20-mers screened as 186 families of 17 probes each, 5,355,878,467,758 probe-windows counted with no sampling and no cutoff inside the arithmetic. At 4 mismatches: 2 families pair in strictly fewer places than all sixteen permutations of their own bases, 8 tie the lowest, 122 sit inside their own control range, 1 ties the highest, 44 pair in more places than every permutation, and 9 tie all sixteen. 18 strands are UBIQUITOUS, 266 REFUSED and 19 NOT_KNOWN β three silences, none of which is zero off-targets.
PROGRAM registry-specificity-ranking
FIGURE 2d74f5c676d51d45df178f9fed7840729bd87633ae8e5a9104383f6fbd7c3fd1
FIGURE 717027798090 + 4638850669668 = 5355878467758
FIGURE 169 registry strands + 17 undesigned constructed 20-mers
FIGURE 18 UBIQUITOUS, 266 REFUSED, 19 NOT_KNOWN
FIGURE BELOW-all-16 2 | ties-lowest 8 | inside 122 | ties-highest 1 |
SEAL 2d74f5c676d51d45df178f9fed7840729bd87633ae8e5a9104383f6fbd7c3fd1
GRADE MEASURED
SOURCE NCATS GSRS class nucleicAcid enumerated in full, screened against GENCODE v50 transcripts
WHERE_THE_LAW_LIVES reproduce/registry-specificity-ranking.swift
REFUSED not a safety finding. A near-complementary window is a place a molecule COULD pair β not a cut, not an occupancy, not a clinical event. A high rank is not a safety finding and a low rank is not a clearance
REFUSED not a ranking of medicines against each other. Every comparison on this entry is a strand against permutations of ITS OWN bases, never against another strand, and raw burden is never pooled across lengths
REFUSED not a claim about the 303 excluded strands. UBIQUITOUS, REFUSED and NOT_KNOWN are three different answers and an excluded strand is never a clean strand
REFUSED not the chemistry half. Phosphorothioate backbone binding, complement activation, thrombocytopenia and aseptic meningitis are not sequence matches and this program does not reach them
FALSIFIER a registry strand in the 8-60 nt band this enumeration omits; or a re-run on the same two public inputs reaching a different seal, a different disposition for any family, or a different count of families strictly below all sixteen
REPRODUCE xcrun swiftc -O -swift-version 5 reproduce/registry-specificity-ranking.swift -o /tmp/rsr && curl -sL <gencode v50 transcripts fasta> | gunzip -c | /tmp/rsr
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-08
The full page, including the tie rule that took a claimed nineteen designed-specificity families down to a measured two, is The order of the bases.
The genome-wide map above answers where one guide can cut. This entry asks the comparative question of every clinical guide the public registry names: twenty-five of them, under three different PAM rules, each ranked against 32 permutations of its own bases.
The result the control arm was built for is not a flattering one, and it is the honest half. Zero of 25 sit below their own composition floor. But a therapeutic spacer is not free to be chosen β it is dictated by the locus the medicine has to cut, while its 32 permutations have no locus to hit and are free to be whatever minimises burden. The comparison is between a molecule with a job and 32 with none, so the result is a statement about the constraint, never about anyone's design. That every one of them still reaches zero sites at one mismatch under that constraint is the more remarkable half of the same measurement.
And the 3 GB download is not required to check it. The 3,022-line sealed transcript is shipped in this repository, digest-pinned, beside a deliberately truncated control that refuses β so the corpus carries both directions of its own instrument.
LIBRARY COMPOUNDS
IDENTITY_KIND CONTENT_DIGEST
IDENTITY 61ef3254a8455ee339917368c5d45013072a377592045d2e0494cc99c0fad247
DIGEST_OF the sealed transcript of the complete genome-wide enumeration for every clinical CRISPR guide whose spacer is public, with every guide's control arm
TITLE Twenty-five clinical CRISPR guides, complete enumeration under three PAM rules, each ranked against 32 permutations of its own bases
MEASURED 25 guides registered in a public login-free substance registry with a spacer and named in a WHO INN Proposed List: 18 SpCas9 family under NGG, 4 AsCas12a under TTTV, 3 Cas12b under TTN, at each guide's own measured spacer length, across both strands of GRCh38 primary assembly. Every one of the 24 full-length guides has ZERO sites at one mismatch and 22 of 24 have zero at two; the whole off-target burden sits in the 3 and 4 mismatch buckets. 2,718 coordinates are named in full with chromosome, position and strand, and the number of coordinate lines emitted equals the sum of the 24 burdens exactly, 2,718 = 2,718. Against 32 permutations of its own bases each: 0 of 25 sit below their own composition floor and 25 of 25 sit inside the range their own bases produce, where permutation burdens span 0 to 7,718,082.
PROGRAM crispr-clinical-guide-atlas-exact
FIGURE 61ef3254a8455ee339917368c5d45013072a377592045d2e0494cc99c0fad247
FIGURE CRISPR_CLINICAL_GUIDE_ATLAS__COMPLETE_ENUMERATION_IS_OBSERVER_INVARIANT
FIGURE bb188a75837c3384322723c5935da34605cb89caae43cf3b0468572fda60b80c
SEAL 61ef3254a8455ee339917368c5d45013072a377592045d2e0494cc99c0fad247
GRADE MEASURED
SOURCE NCATS GSRS spacers with WHO INN Proposed List product names, screened against GENCODE GRCh38 primary assembly, sha256 b760d18dbb651dd14dfc290083371b3ef3bff122d43a9cefb13ca4ecf38f05ca
WHERE_THE_LAW_LIVES reproduce/crispr-clinical-guide-atlas-exact.swift
REFUSED not a claim that any of these therapies is safe, or unsafe. Neither verdict is ours to give and neither follows from this arithmetic
REFUSED not a cut. A site counted here is a place the chemistry COULD direct a cut, not an occupancy, not a clinical event, and not evidence that any medicine harms anyone
REFUSED not a judgement of anyone's guide design. A therapeutic spacer is dictated by the locus the medicine has to cut while its permutations have no locus to hit, so the control arm is a statement about that constraint and never about design quality
REFUSED not coverage of the six products whose spacer is not public. For those the honest word is NOT_KNOWN and it is printed as NOT_KNOWN rather than as zero
FALSIFIER a candidate site in GRCh38 within the reported mismatch range, under the guide's own PAM rule and spacer length, that this enumeration omits; or a coordinate count that does not equal the sum of the reported burdens
REPRODUCE xcrun swiftc -O -swift-version 5 reproduce/crispr-clinical-guide-atlas-exact.swift -o /tmp/atlas && curl -sL <GRCh38 primary assembly fasta gz> | gunzip -c | /tmp/atlas corpus/crispr-clinical/guides_expanded.tsv
NOTE The 3,022-line sealed transcript is SHIPPED in the repository as corpus/crispr-clinical/RUN-full-assembly-n32.txt, digest-pinned in that directory SHA256SUMS beside a deliberately truncated control that REFUSES, so the seal can be checked without the 3 GB assembly download. The program itself refuses without the assembly, so in a clean clone this entry reads NOT_KNOWN until it is run or that transcript is given as evidence.
NOT_ADVICE Nothing in this entry is medical advice and it is not a recommendation to take anything.
ADDED 2026-09-09
A library that shows only what it admitted cannot be audited. Six things were considered for this library and did not enter, or entered only as an explicit absence.
Study 26 publishes eleven drug pairs, one per tumour type, each the top of 44,850 scored, each clearing a vehicle-pair control, a self-pair control and a random-gene-set null. Written out, that is the strongest-sounding evidence on the board, and it is the one thing on this page that a stranger cannot check.
Measured, not assumed: searched across the whole standalone wiki, the string AMG-208 appears in
exactly one file β the study page itself. So does saracatinib. No program in reproduce/
prints any of the pairs, no transcript contains them, and no corpus file carries them. A reader of
the study page would take those pairs as sealed; a reader with a clean clone cannot re-derive a
single one.
That is E3 and E4 doing exactly the job they exist for. The pairs are not deleted and not
disputed. They are named as an open slot below, with the reason recorded, and they enter the day a
program in reproduce/ prints them. The same applies to the four tumour types that did not clear
and to the measured blocker named for them β published set size rather than assay coverage. Real
work; not yet re-derivable; therefore not yet admitted.
Of 472 strands screened for a target by complementarity against the transcriptome, 285 had no perfect complement anywhere. They were therefore never screened for off-targets.
They get their own line here because absence is the easiest thing in a library to misread as safety. A strand with no measured off-target map is not a quiet strand. It is an unscreened one. The atlas entry carries that as its first refusal line so the distinction travels with the row, and it is repeated here so a reader who only reads this section still gets it.
There are three answers in this library and this is the difference between two of them: ABSENCE means we looked and found nothing there; REFUSAL means a clause was violated and is named; NOT_KNOWN means the evidence to decide is not present here. These 285 are the first: measured absence of a perfect complement, which is a finding, and which is not a clearance.
confidence, coherence, overall_score, validation_passed, novelty_score, quality_score
and their kin may not appear in a MEASURED or FIGURE line anywhere in this library. None of
them measures anything outside the program that wrote them, and in this wiki's corpora every one
of them is a Double.
They remain welcome in a refusal line β saying a column is barred is the opposite of relying on it, and the law carries a control arm proving the detector knows the difference.
No entry in this library claims efficacy, and none claims safety. A signature-inversion score is not efficacy. An off-target map is not a safety clearance. A near-complementary window is not a cut, and a PAM plus complementarity is where a cut is possible, never where it happens. Every entry above carries those refusals in its own block rather than in this preamble, because the preamble is what gets left behind when a row is copied.
An entry names what a system is, what was measured about it and where the law lives. It
never carries a procedure a person could follow. A constructed violation is on disk in
control-cases/case-7-synthesis-cookbook.md β otherwise the admitted zilganersen entry with exactly
one line changed β and the law refuses it naming the rule that caught it, the fabrication verb and
the quantity, so a false positive would be contestable rather than mysterious.
Refusals are only credible if you can make them happen. Each of these is the admitted zilganersen
entry with exactly one thing changed, on disk in control-cases/:
case-1-claim-no-program-prints.md REFUSED E3_PROGRAM
case-1b-figure-not-printed.md REFUSED E4_FIGURE
case-2-no-refusal-line.md REFUSED E8_REFUSAL
case-3-no-identifier.md REFUSED E1_IDENTITY ('unknown' is a placeholder)
case-4-verified-on-reported-evidence.md REFUSED E7_GRADE_SUPPORTED
control-cases/collapsed-library/ REFUSED L3_DISTINCT_IDENTITY
control-cases/empty-library/ REFUSED L1_NOT_EMPTY
The last two are the ones that matter most to a library. collapsed-library is the Study-37 shape
reproduced exactly β four entries, one identity, four different titles β and it prints both axes
side by side so you can watch the wrong counter report perfect diversity:
axis entries distinct most at 1 declared holds
IDENTITY 4 1 4 1 NO
TITLE (census, not a gate) 4 4 1 - -
The collapsed library declares 4 per program, per seal, per measured and per triple β as
generously as a library can β so the refusal cannot be blamed on a mean declaration anywhere else.
DECLARED_ENTRIES_PER_IDENTITY 1 is the only thing left, and it is what catches it.
empty-library is REFUSED, never reported clean: zero admitted entries is the weakest possible
evidence and calling it a clean library is the strongest possible claim.
A slot is a measurement this library has named and does not have: no program, no figure, no seal, nothing to hold. Slots are counted in no axis above and gate on nothing.
Both slots this page carried on 2026-09-07 are now closed, and closed the only way a slot may close β a program prints them:
| slot named 2026-09-07 | why it was empty | closed |
|---|---|---|
| The eleven master-regulator drug pairs, one per tumour type | published in prose on the study page; no program in reproduce/ printed them, so a stranger could not re-derive them from a clean clone |
2026-09-07, entry 6 β study26-combination-pairs-exact
|
| The registry-wide specificity ranking across all in-scope strands | running at that grading; no program, no transcript, no seal |
2026-09-08, entry 7 β registry-specificity-ranking, seal 2d74f5c6β¦
|
Three slots are open, and each names the one condition that would fill it:
| slot | why it is empty | named |
|---|---|---|
| The exact off-target map of del-zota's payload | the sequence is not public. The slot fills the day the sponsor or a regulator puts it on the table β the instrument is already written | 2026-09-08 |
| The exact off-target map of VERVE-102's guide on the real molecule | the same reason, on a base editor rather than an oligonucleotide | 2026-09-08 |
| A signature-reversal or network-recovery figure for rentosertib | there is nothing to compute against: the compound is ABSENT from both LINCS perturbagen tables (51,383 and 2,170 rows read, 0 matches, in a lookup returning 1 and 1 for pirfenidone and nintedanib) and TNIK is a master regulator in none of our cohorts. The slot fills if a public perturbation corpus carries the molecule | 2026-09-08 |
An invented result would have been easier and would have looked better. A slot stays empty until a program prints it, and the three above are in the manifest, so the grader prints them on every run whether anyone reads this page or not.
This library states both, always. Reproduced verbatim from the grading run:
axis entries distinct most at 1 declared holds
IDENTITY 4 4 1 1 yes
PROGRAM 4 4 1 1 yes
SEAL (sealed entries only) 4 4 1 1 yes
MEASURED 4 4 1 1 yes
IDENTITY|PROGRAM|SEAL triple 4 4 1 1 yes
TITLE (census, not a gate) 4 4 1 - -
GRADE (census, not a gate) 4 1 4 - -
'most at 1' is the count carried by the single most repeated value on that
axis. It is the number the declared ceiling is about, and it is printed
whether the ceiling holds or not β an aggregate that clears while one value
carries five against a declared two is the collapse this table exists to show.
GRADE CENSUS over the admitted set (a census, NOT a gate β no library is
refused for its distribution of grades, and no library should be read as
strong for having none of the weaker ones):
MEASURED 4
OPEN SLOTS β named, and empty. A slot is NOT an entry and is counted in no
axis above. It is a measurement this library has named and does not have:
no program, no figure, no seal. Naming it is how a library says what it is
missing instead of quietly not having it.
- The exact off-target map of del-zota's payload. The sequence is not public; the slot fills the day the sponsor or a regulator puts it on the table. Named 2026-09-08.
- The exact off-target map of VERVE-102's guide on the real molecule. Named 2026-09-08.
- An ADMISSIBLE ENTRY for rentosertib. Two separate things block it and both are measured. (1) The recovery figure cannot be computed: the compound is ABSENT from both LINCS perturbagen tables and TNIK is a master regulator in none of our cohorts, so there is nothing to compute against. (2) Its three SEALED-looking arms cannot be filed either: measured 2026-09-09, none of rentosertib-structure-lock-exact, tnik-network-degree-exact or modality-register-exact accumulates a transcript or digests its own results, so clause E5 has no seal to check and the page publishes SOURCE digests only. The slot fills when a public perturbation corpus carries the molecule, or sooner when those three programs are given a transcript seal. Named 2026-09-08, condition made specific 2026-09-09.
PER-LIBRARY CLAUSES
ok L1_NOT_EMPTY 8 entry file(s) present
ok L2_MANIFEST LIBRARY COMPOUNDS declares: per identity 1, per program 1, per seal 1, per measured 1, per triple 1; page Library-Of-Compound-Cures.md; open slots 3
ok L7_NO_ENTRY_REFUSED 0 of 8 entries refused
ok L3_DISTINCT_IDENTITY 4 entries, 4 distinct; most repeated value 'AXQ9493NT2' carries 1, declared ceiling 1 per value β 1 <= 1
ok L4_DISTINCT_PROGRAM 4 entries, 4 distinct; most repeated value 'mr-topology-vs-expression-exact' carries 1, declared ceiling 1 per value β 1 <= 1
ok L5_DISTINCT_SEAL 4 entries, 4 distinct; most repeated value '513de7e9db6556df1895bfce4cb4d69e4816d7b45b75bee1dc8452335c2c7757' carries 1, declared ceiling 1 per value β 1 <= 1
ok L6_DISTINCT_MEASURED 4 entries, 4 distinct; most repeated value '3 perfect 20/20 windows, all in LPA, over 670,670 transcripts and 1,467,336,203 windows against GENCODE v50. At 17/20 or better outside LPA: LPAL2, TMEM254-AS1, LINC02606, LINC01065, ISM1.' carries 1, declared ceiling 1 per value β 1 <= 1
ok L8_DISTINCT_TRIPLE 4 entries, 4 distinct; most repeated value 'AXQ9493NT2 | zilganersen-offtarget-whole-transcriptome | edcb277ddea44820502b6446b00ed8bdcfdb08835d6785fdee7d1b370420bbaa' carries 1, declared ceiling 1 per value β 1 <= 1
Eight entry files, four admitted here, four held β and the four held are the honest half of this table. The library holds eight measurements. Four are graded ADMITTED from a clean clone, because their programs run to completion against corpora small enough to ship here. The other four β the registry-wide atlas, the genome-wide CRISPR map, the specificity ranking and the clinical guide atlas β name a program that refuses without a public download of 1.5 to 3 GB, so in a clean clone their evidence is not present and the law returns NOT_KNOWN. A held entry is not in the library and is not thrown out of it: point the grader at a directory holding those four transcripts and they admit. For the guide atlas that transcript is shipped in this repository, 3,022 lines, digest-pinned beside a deliberately truncated control that refuses β so its seal can be checked without the download at all.
That distinction is younger than this page, and it was our own defect. Until 2026-09-08 all three of them read ADMITTED here, because several programs now print their published figures on every exit path β the right thing for the wiki harness, which must check a page against its program with no corpus present β and clauses E4 and E5 were matching those figures against text the run had quoted rather than computed. The seal of a screen that measured nothing was being credited to it. Three new control arms hold the repair: a refusal transcript that quotes every declared figure must HOLD, one that quotes the declared seal must HOLD, and the same entry against a complete run must still ADMIT β because a guard that always holds is the same defect wearing the other face.
Every ceiling is declared at 1 in library/compounds/LIBRARY.manifest and tested per value β
count(most repeated value) β€ declared β never by a ratio and never in aggregate. most at 1 is the
column that carries the test; an aggregate can clear while one value carries five against a declared
two, and on the sibling PROTEINS library it did.
L9 is the clause that ties this page to what was graded. The checker grades
library/compounds/; you are reading Library-Of-Compound-Cures.md. Nothing made them agree until
L9 did β it compares the fenced entry blocks of the two as multisets and refuses if they differ,
so an edit to this page that is not also an edit to the entry it publishes fails the harness.
GRADE reads 4 admitted entries over 1 distinct value and is labelled census, not a gate, in the
output and here. Every admitted entry is graded MEASURED. A clause that never refuses is
decoration, and calling a decoration a gate is how a reader comes to trust one β so this library
does not claim strength from its grade distribution, it reports it.
Read the two columns together. The row count alone is a loop bound.
Anyone. The law is the gatekeeper, not a person. There is no reviewer to persuade. An addition is a file, a program and a transcript, and the checker is the referee β it runs in public, on a clean clone, in well under a second once built.
-
The entry file in
library/compounds/, carrying anaffine-entryblock the checker admits. -
The program in
reproduce/, if it is new: self-contained, integer, with its own control arm in both directions. A program that cannot fail has proved nothing. -
A
check_figurerow inreproduce/validate.shfor at least one of the entry's figures, so the wiki's own harness fails if the page and the program ever drift apart. All five programs behind this library already carry them β thirty rows in total across the five. - The manifest ceilings, moved if the addition needs them moved.
Point 4 is not bookkeeping. A stale ceiling silently re-admits what was just excluded. This programme has already paid that bill once, on a float ratchet whose frozen constant kept forgiving what it had been raised to catch. The same failure here would let this library grow past its own declared honesty without a single clause going red.
Nothing is ever deleted. A library that cannot retract cannot be trusted, and a library that retracts by deleting is worse, because it cannot be caught. An entry whose evidence is refuted is superseded in place:
- add
REFUTED_BYwith what refuted it and aYYYY-MM-DDdate; - rewrite
GRADEto what the surviving evidence supports β usuallyNOT_KNOWN; - leave the original
MEASURED,FIGURE,SEALandREFUSEDlines untouched, so the claim and its refutation stand on the same page; -
SUPERSEDESon the replacement entry, if there is one.
E14 enforces it: refuted-and-still-MEASURED is refused, an undated refutation is refused because
it cannot be ordered against the claim it refutes, and a refuted entry that is dated and regraded is
ADMITTED. Retraction is a path through the law, not an exit from it.
This is written hard for a reason. In this substrate's own ledger, the append-only triggers were disarmable at runtime and three migrations used the bypass; for every game they touched, "never CUREd" and "its CUREs were deleted" are now indistinguishable. Deleting a refuted entry is the same act, one step later.
- Not medical advice. Nothing here is medical advice and no entry is a recommendation to take anything. Nothing here should change anyone's treatment.
- Not a safety clearance. An off-target map measures where binding or cutting is possible. Whether it happens β in a cell, at a dose, in that chromatin state β is a laboratory question these programs have not asked and cannot answer. Off-target potential is one input to safety among many, and this library measures that one.
- Not an efficacy claim. A signature-inversion score is not efficacy. A recovered master-regulator set is not a treatment.
- Not a ranking. The atlas publishes coverage and targets, not an ordering of substances by risk. Nothing here says one medicine is better than another.
- Not a substitute for a laboratory or a regulator. It is the exact, complete, re-derivable enumeration such a conversation should start from, available without permission and without trusting us.
- Not a claim that an admitted entry is true. ADMITTED means the entry is checkable β named, produced by a program a stranger can run, graded at what its evidence supports, and explicit about what it refuses to say.
- Not finished. Two slots are named and empty, and they are the honest shape of what is missing.
git clone https://github.com/gaiaftcl-sudo/uum8dSolarResearch.git
cd uum8dSolarResearch
# grade the libraries β the admission law is the primary artefact, and ALL THREE go in
# ONE run: F1 is a relation between libraries and one library alone cannot answer it
swiftc -O -swift-version 5 reproduce/library-admission-law.swift -o /tmp/lal
/tmp/lal --library library/proteins --library library/compounds --library library/materials \
--reproduce reproduce --evidence /tmp
# and any single entry's own measurement, e.g. the genome-wide guide map
swiftc -O reproduce/crispr-genome-offtarget-exact.swift -o /tmp/crispr
curl -sL https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/latest_release/GRCh38.primary_assembly.genome.fa.gz \
| gunzip -c | /tmp/crispr corpus/crispr-atlas/guides_all.tsvNo account, no key, no data-use agreement, and no floating point anywhere in the exact path.
Each entry above carries its own REPRODUCE line, and none of them names a path private to one
machine β that is clause E9, and it is checked rather than promised.
- The library admission law β what may enter, and the 71 arms that prove it refuses.
- The Library of Proteins Β· The Library of Material Systems β the other two libraries, graded in the same run as this one.
- Where else could this guide cut? β the full per-guide map with coordinates.
- The exact off-target atlas of the nucleic-acid medicines β the registry-wide screen.
- The safety question made exact β zilganersen, with its composition-matched control.
- Study 26 β Master regulator bonds β the study the discrimination court came from.
- Study 37 β 37,910 validated discoveries, five molecules β why the per-library half exists.
This wiki and its programs are published source-available: the source is visible so anyone can inspect it and re-derive every figure. That visibility grants no rights. The repository carries no LICENSE, which under default copyright means all rights are reserved. Any other use requires a separate written licensing agreement with the authors.
Rights β source-available, all rights reserved. This wiki and its repository are published for public inspection and to let anyone re-derive the figures. They carry no LICENSE; under default copyright, all rights are reserved. No right is given or intended to use, run, or deploy it for any purpose other than re-deriving the published figures, nor to modify or build on it β any other use requires a written licensing agreement with the authors. Β· Affine.Earth Β· zero float Β· zero shear
Each step is the reason the next one exists. Nothing here is medical advice, and no page calls any medicine safe or unsafe.
1 Β· Why an exact safety screen at all
- Cures Without the Gatekeeper β the medicine front door: six real written medicines, one screen anyone can re-run
- The library admission law β what may enter, and the 71 arms that prove it refuses. The primary artefact.
2 Β· The three libraries, which grow rather than close
- The Library of Compound Cures β exact off-target maps for the medicines the registry publishes
- The Library of Proteins β 80,080 generated sequences, novel chemical matter, graded honestly
- The Library of Material Systems β what a system is, what was measured, where the law lives. C-007 absolute: no recipes
3 Β· The maps β every place a molecule could act, counted
- The off-target atlas β every nucleic-acid medicine the registry publishes a sequence for: WHERE it can pair
- The order of the bases β WHETHER THAT BURDEN IS UNUSUAL: 472 strands ranked against sixteen rearrangements of their own bases
- Where else could this guide cut? β the whole human genome, counted
- Designed, or forced by its own bases? β every clinical CRISPR guide, with its own composition as the control
- What a public genome deposit will tell you β and four ways it will mislead a health tool first
- Study 45 β which of nine billion answers a laboratory can act on β a safety review of AlphaGenome Atlas, measured live on 1,200 real variants at two genes. The headline score separates every one. The detailed tracks do not: splice-site usage hands back 950 of every 1,000 values shared with another variant at HBB and 998 at CFTR, and the shared values pile up in the quiet band where a bench clears a variant
4 Β· One medicine at a time
- Zilganersen β the first treatment for Alexander disease, screened on the real approved sequence
- A drug an AI designed β rentosertib for pulmonary fibrosis, and exactly what our instruments reach
- CAR-T, halted β the verdict a regulator could re-derive
- N-of-1 antisense β the only safety net at a population of one
- VERVE-102 β the off-target lattice a stranger can re-derive
- PM359 β prime editing, certified before anyone is dosed
- Del-Zota β the one safety question that can be made exact
5 Β· What keeps a disease alive, and what moves it
- Study 26 β master regulator bonds β 17 tumour types, 7,673 tumours; eleven compound pairs where no single agent among 20,308 cleared any
- Study 20 β Rife frequency β light and frequency, measured rather than dismissed
- Study 37 β five molecules β 37,910 "validated discoveries", 5 distinct molecules; why per-item validation cannot see a corpus-level defect
- Are the generated cures new? β 80,080 peptides against the human proteome
- Study 16 β disease type Β· Study 17 β chemistry InChIKey Β· Study 14 β protein lattice
- No language model in this stack β what the answers here are made of: measured 2026-09-12, no cell runs a model process, opens a model port or holds an unmasked model unit, and a gate refuses their return
- Run any study in your browser β all ninety programs open on your own device, forty-nine run there, and the run tells you whether it printed the sealed bytes
- The ontology β grades, terminals, controls, and what each page may say
- Zero Float Β· Zero Shear β the method in one page
- Ask someone you trust to check this β what to hand a sceptic
- Readersβ guide Β· Program index β all 42 studies Β· White paper Β· Roadmap
- The full-grade replacement β 49 retired instruments, 4 verticals
- The exactness seam β the business case
- Build a study β Falcon walkthrough β how to add one yourself
The same move every time: take a domain where a floating-point model is the accepted instrument, compute the same quantity in exact integers, and seal the cases where the two render opposite verdicts. The subject under grading is always the instrument, never the phenomenon.
- Study 48 β the atom already has an address β silicon dimers 3.840 Γ apart, the smallest commanded scale on the board: a length carried in single precision mis-addresses its first atom at step 8,783; an address cannot
- Study 49 β the phase code never needs Ο β a phase-only modulator takes 256 codes per pixel; the code is a ratio of integers
- Study 50 β CMS raw data from the LHC, read exactly β CMS's 2011 collision bytes streamed from CERN Open Data into the Affine IDE and read in exact integers, every collision a hologram you can turn: 138 of 3,564 bunch slots carry 93,110 of 120,742 collisions, and in 3,854 the event record reads its slot exactly 3 lower than the pixel boards Β· public release
- Study 55 β IceCube: the light in the ice, hit by hit β IceCube's calibrated hits read byte for byte: 4 published files, 9,749 events, 2,289,821 hits, a census seal per file
- Study 47 β translation shear: the meaning that survives a language β LAW FROZEN Β· LIVE CLAIM, measured 2026-09-11 and again fleet-wide 2026-09-12: translation as an exact coordinate transform, charts derived in memory at every start from the raw rows of a pinned public weight file and never written down; one lattice digest on 9/9 cells, zero drift, every refusal named. The generative comparison arm is ABSENT β there is no generative translator in the stack
- Study 34 β the observer-invariant verdict β why a safety verdict needs an exact law, not a bigger computer
- Study 35 β the safety brain that forgets β deaf in 8.4 seconds, forgets across machines, disagrees with itself
- Study 36 β the language game of Fermat's Last Theorem β guess and shear, or project
- Study 40 β the number the simulation throws away β their ICO result computed as a fraction; in float the effect returns 0 at every width, and an effect returned as zero cannot be searched for
- Study 41 β fifty years of solving the wrong problem β the ordering was never about time, it was about arithmetic; 177Γ the work and 2,400Γ the wrong guesses to return the answer the machine already had
- Study 42 β The Exact Contract β 2.7M flood settlements in Int128 cents; the step exists and the rigidity does not
- Study 29 β continuous-model shear
- The lattice holds Β· Impact study β continuum dead Β· Death of continuous shear
- Fourier Phantom β Anima FNO vs 11+12+13 Β· Stellar dynamo kill shot
- QCD: freedom is dilation Β· UUM-8D vs IUT β WIN
- Peer-review bundle Β· Conjecture alignment
- We need fusion β the verdict every machine can check
- Affine Fusion Control β the local exact-integer court Β· public release
- Fusion researcher's guide
- Study 33 β the fusion control verdict court
- Every season, fifty tonnes β the biosphere-safety case
- The forcing nobody measures Β· Impact study β the SpaceX trajectory
- Study 31 β the biosphere joint ledger β LIVE on the court, 9/9 cells
- Study 28 β the wet-bulb threshold court β Act 1 sealed
- Study 32 β the taxi-out floor court
- Where humans actually yield β the fatigue curves, and where the rules already agree
- Study 30 β sovereign edge pod Β· Manufacture contracts
- The detector that flags the whole market β a manipulation geometry in exact integers, and the regulator's own indicator scored against a legitimate quoter
- Study 43 β almost every order is cancelled, and that is normal β nine sessions, three operators, two continents: 935 to 998 of every 1,000 orders that ended, ended without trading. A check that flags almost everything is a denominator, not a detector β and the stock you pick moves it further than the exchange does
- Study 44 β nine billion answers, four billion ways to say them β AlphaGenome Atlas ships 9 billion predictions in single-precision floats, which hold 4.28 billion distinct values: 52 of every 100 variants MUST share a score with another. Agreement and exhaustion look identical on the wire
- Study 38 β the loss-reserve triangle β a reserve is an exact rational; 481 of 482 verdicts identical in both arithmetics; the sixteen-billion figure comes from an unchecked premise
- Study 39 β the actuarial domain β life, pensions, multi-state and aggregation; the margin is 8 significant digits at its tightest
- Run any study in your browser β the βΆ badge beside a program name opens it in the Studio, already built and carrying its inputs, and runs it on your machine with nothing sent back
- Explore the live courts
- MCP user guide β all 51 tools Β· Deterministic no-float courts for LLMs
- Court Client β generic wasm IDE for every court Β· Court-client checkpoint
- Coding Court β the verdict IS the artifact
-
Zed β the coding agent, for developers β set Zed 1.20.2 up on
https://affine.earth/v1, no language model anywhere; what a turn does, the wire, the autonomous closure -
Zed β Minecraft comes to life β the two-person interaction, sealed: it asks, cites, clones a sibling with a value you supply, verifies by replay; the court flips
REFUSED_UNKNOWN_BUDGET β WIN - Zed β the agent that teaches the whole domain β architecture, protocols, server management and git, each answered from lines it read and instruments it ran; five closures PROVEN, and the cattle question answered with a counter the fleet did not have
- Math Court on Glama Β· Math Court user guide Β· Example app β entire court
- Quantum algorithms inventory Β· Shor witness certifier
- MCP clients (public)
- Glama connector
- Look in the UI (no visitor data)
A study appears here under the state its evidence has earned, and above under the question it answers. The two are different filings of the same work, on purpose.
β LAW FROZEN Β· DATA SEALED
- Study 06 β explosion vs earthquake Β· Study 07 β Sgr A* raw visibilities
- Study 11 β Ehrhart volume Β· Study 12 β parallel repetition Β· Study 13 β Connes rigidity
- Study 14 β protein lattice Β· Study 16 β disease type Β· Study 17 β chemistry InChIKey
- Study 18 β material STD Β· Study 19 β Go First dice
- Study 26 β master regulator bonds β 17 tumour types, every finding published
π΄ LIVE CLAIM β standing, not sealed
- Study 02 β launch ionospheric holes Β· Study 02 β regulatory alarm
- Study 09 β global convective bond Β· Study 20 β Rife frequency Β· Study 21 β stellar dynamo
- Study 22 β 2-local Hamiltonian Β· Study 23 β spin glass Β· Study 24 β N-representability Β· Study 25 β exact permanent
π CHARTER Β· OPEN β the findings, published either way
- Study 03 β flare SIDs β archive went dead Β· predictions and validations
- Study 04 β tsunami vs surge β partial seal Β· Study 05 β Forbush decreases
- Study 08 β Gaia BH1 β no corpus until DR4 Β· Study 10 β Fermi / dark matter β does not disprove DM
- Study 15 β Skala DFT shear Β· Study 27 β exact nuclear scattering
- Overview Β· First 27 days Β· Success criteria
- The science, and what history says Β· Blind spots β five stories magnitude models miss
- Historical corpus Β· Data archives β every source, exactly how to reach it
- Model shear Β· Benchmark results Β· Prediction registry
- Substrate architecture β how a shadow becomes a geometry
- Operations runbook Β· Satellite & aviation advisory