MONAI Deploy Workflow Manager Release v0.1.0

💡 If you want to know more about MONAI Deploy WG vision, overall structure, and guidelines, please read MONAI Deploy first.

💡 If you want to know more about MONAI Deploy Workflow Manager, please refer to our README for information on the Workflow Manager and how you can contribute to it.

What's Included

• Project setup & Payload gRPC service by @mocsharp in #4
• SRS & DRD by @mocsharp in #1
• Workflow execution requirements by @joshliberty in #38
• Update design to address new requirements by @joshliberty in #39
• Update README.md by @dbericat in #45
• Update software architecture design documentation by @joshliberty in #71
• Add Contributing guideline w/ .NET analyzer rules by @mocsharp in #72
• Refine the CI pipeline by @JossSparkesAnswer in #74
• Rename Workload to Workflow by @mocsharp in #75
• Split CI into different workflows by @RemakingEden in #81
• Listen to new workflow request #51 by @jackschofield23 in #88
• Add License Scanning to the Pipeline by @RemakingEden in #90
• 70 workflow instance by @jackschofield23 in #101
• Add post workflow controller by @jackschofield23 in #105
• Add integration test framework by @RemakingEden in #106
• Add update task functionality by @SN-Codevio in #111
• Add task destinations support by @jackschofield23 in #113
• Implement Task Manager by @mocsharp in #84
• Update Monai.Deploy.Messaging to 0.1.0-rc0036 by @mocsharp in #122
• Update Dockerfile with correct values for workflow manager by @Dusty-Meg in #126
• 95/task status integration tests by @JoeBatt1989 in #128
• 96 post evaluators executor 2 by @lillie-dae in #121
• Task destination integration tests by @JoeBatt1989 in #132
• Update MWM high level design diagram by @mocsharp in #151
• add workflows list api by @jackschofield23 in #152
• handle task artifacts - workflow executer by @jackschofield23 in #131
• add argo metadata repository by @jackschofield23 in #150
• Add task artifacts within task executer by @jackschofield23 in #148
• Generate temporary credentials (Links to #52) #112 by @lillie-dae in #149
• Get workflow instance by Id & List workflow instances by @jackschofield23 in #156
• add update workflow endpoint by @jackschofield23 in #153
• fix namespaces by @jackschofield23 in #164
• 52 handle task artefacts int test by @DuncanSangster in #172
• 52 handle task artefacts int test by @DuncanSangster in #175
• Changes required to add delete API by @lillie-dae in #157
• add task export messages by @jackschofield23 in #165
• Final work for API delete tests by @RemakingEden in #180
• Load storage service plug-in dynamically by @mocsharp in #182
• Use gitleaks 1.6.0 by @mocsharp in #184
• Dynamically load message broker plug-in by @mocsharp in #183
• Save patient details + payload api by @jackschofield23 in #181
• 114 dicom metadata by @lillie-dae in #185
• Update mwm-workflow-spec.md by @joshliberty in #168
• Dockle container scan fix by @Dusty-Meg in #198
• Replaced webappfactory with IHost by @JoeBatt1989 in #178
• Extensions to enable Workflow Executor & Task Executor by @mocsharp in #167
• Change project name and reduce execution time by @JoeBatt1989 in #205
• Add specflow logging to step definitions by @RemakingEden in #206
• 127 support execution stats by @lillie-dae in #207
• 189 / 142 Argo resource limit usage by @lillie-dae in #194
• 144 post evaluators conditional execution tests by @RemakingEden in #208
• Lastest Changes to Docs by @JJFinnerty in #209
• add log task complete by @jackschofield23 in #176
• add test plugin by @jackschofield23 in #192
• aide clinical review plugin by @jackschofield23 in #190
• Jbatt/212 payloads api integration tests by @JoeBatt1989 in #216
• fix issues with debugging and running in docker by @neildsouth in #219
• 187 argo task workflow parameters by @lillie-dae in #210
• 98 support router tasks by @jackschofield23 in #217
• 201 202 203 misc fixes by @jackschofield23 in #221
• 199 misc api changes by @lillie-dae in #220
• Integration tests for patient details by @RemakingEden in #229
• Intergration tests for Router Tasks by @JoeBatt1989 in #235
• Task Manager Integration Tests by @JoeBatt1989 in #239
• Integration framework misc changes by @JoeBatt1989 in #240
• 200 api pagination by @lillie-dae in #228
• add rabbit requeue logic by @jackschofield23 in #234
• API pagination tests by @RemakingEden in #248
• 246 - fix task artifacts part 1 by @jackschofield23 in #247
• Changed name of integration tests in workflow by @RemakingEden in #249
• export task handling by @jackschofield23 in #241
• Fix for ExecutionStats not working in mongo by @lillie-dae in #250
• add output artifacts to task dispatch by @jackschofield23 in #253
• updated check for Task Manager and Workflow Executor start up by @JoeBatt1989 in #257
• Enable license header scan by @mocsharp in #256
• end to end fixs by @neildsouth in #260
• Added a step to purge rabbit messages by @JoeBatt1989 in #261
• Basic workflow validation by @lillie-dae in #258
• Disable license header bot comments by @mocsharp in #264
• Move task dispatch events to database from in-memory store. by @mocsharp in #244
• 254 clinical review reviewed task by @jackschofield23 in #259
• Nds adding developer docs by @neildsouth in #263
• 64 tasks api by @lillie-dae in #266
• 262 argo stats fix by @lillie-dae in #268
• couple of small fixs, including validation on exportTasks->continditions by @neildsouth in #277
• Workflow executor task artifacts tests by @RemakingEden in #251
• Added new tests for metadata by @RemakingEden in #280
• use task level export destinations by @jackschofield23 in #278
• fix result metadata by @jackschofield23 in #281
• fix warnings by @jackschofield23 in #271
• remove parameter parser by @jackschofield23 in #282
• 275 test workflowexecutor task artifacts contextexecutionstask idartifactsartifact name by @JoeBatt1989 in #284
• Task artifact output dir int tests by @JoeBatt1989 in #285
• add task id naming validation by @jackschofield23 in #292
• Nds helm updates by @neildsouth in #293
• Export task tests by @RemakingEden in #294
• seperate task manager + workflow manager by @jackschofield23 in #291
• /tasks endpoint integration tests by @RemakingEden in #310
• fix second lot of warnings by @jackschofield23 in #283
• add task manager dockerfile by @jackschofield23 in #309
• Update License header feedback when fails by @RemakingEden in #313
• remove task dispatch removal by @jackschofield23 in #314
• Changed a test to data driven by @RemakingEden in #316
• Validation tests for adding and editing workflow by @RemakingEden in #318
• 191 background timeout service by @lillie-dae in #297
• fix empty tasks error by @jackschofield23 in #319
• Metadata condition tests by @RemakingEden in #321
• fix running tasks by @jackschofield23 in #315
• Removed task missing status test by @RemakingEden in #323
• Changed namespace on task manager tests to be consistent by @RemakingEden in #326
• Task status with failure reason int tests by @JoeBatt1989 in #331
• make patient details nullable by @jackschofield23 in #327
• Tests for Task Dispatch persistence by @RemakingEden in #332
• Add dependabot by @RemakingEden in #335
• add controller logging by @jackschofield23 in #322
• remove task execution statuses by @jackschofield23 in #325
• Add Actions update to Dependabot by @RemakingEden in #342
• Improve codeql by @RemakingEden in #349
• fix int test queues by @jackschofield23 in #355
• fix task dispatch persistence by @jackschofield23 in #341
• Fix Sonarcloud noise by @RemakingEden in #365
• Make sonarcloud analysis run on develop by @RemakingEden in #366
• Exclude .sln files from license check by @RemakingEden in #368
• 46 api authentication by @lillie-dae in #329
• Update key for WorkflowTemplateName and Storage lib to 0.2.1 by @mocsharp in #367
• Add LivingDoc reporting to the test results by @RemakingEden in #370
• Added exclusions for tests in code coverage Sonarscanner by @RemakingEden in #373
• Add sonarlint to Authentication project by @mocsharp in #374
• Update export routing key by @jackschofield23 in #384
• Fix CodeCov by @RemakingEden in #393
• AC-506-export-task-does-not-support-folders-387 by @lillie-dae in #394
• fix misc issues by @jackschofield23 in #395
• Nds fix for imagepullsecrets by @neildsouth in #404
• Build & deploy nightly builds for develop branch by @mocsharp in #407
• update workflow validation by @jackschofield23 in #408
• Remove flaky test by @RemakingEden in #412
• AC-487-get-triggered-workflows-by-payload-api-endpoint by @lillie-dae in #405
• remove rabbit details from workflow by @jackschofield23 in #410
• fix deleted workflows triggering by @jackschofield23 in #406
• Added readme for integration tests by @JoeBatt1989 in #418
• Added Docker Plugin in Task Manager. by @pritishnahar95 in #398
• Integration tests for disable pagination and triggered workflow instances by @RemakingEden in #417
• fix patient name dicom by @jackschofield23 in #419
• fix modified workflows triggered by @jackschofield23 in #423
• fix workflow validation by @jackschofield23 in #422
• Include origin AE title in workflow instance search by @samrooke in #420
• Add untestable paths to code coverage exclusions an remove codecov by @RemakingEden in #424
• add multiple conditions to task destinations by @jackschofield23 in #430
• Add CVE-2022-27664 to allowlist by @mocsharp in #431
• fix not found workflow response by @jackschofield23 in #435
• fix workflow validation error by @jackschofield23 in #436
• Reduce CodeQL time to run by @RemakingEden in #439
• Update conditional execution to allow for additional operators by @lillie-dae in #442
• Fix CodeQL by @RemakingEden in #447
• Workflow Request Payloads are saved multiple times when re-queued by @jackschofield23 in #440
• #391 nds addlogging by @neildsouth in #397
• Changed license scanner to be installed by ruby by @RemakingEden in #460
• Prevent multiple artifacts being added to the output array with duplicated names by @samrooke in #457
• AC-579-invalid-id-in-workflowinstances-payloadid-payloadid-does-not-return-400-441 by @lillie-dae in #450
• artifact logging by @jackschofield23 in #432
• update dicom docs by @jackschofield23 in #455
• Added tests for the error strings of all 400 code tests by @RemakingEden in #468
• Ac 586 task timeout implementation by @lillie-dae in #469
• minor fix for argo plugin parameters by @lillie-dae in #388
• only use dcm files for export by @jackschofield23 in #471
• Handle missing mandatory output artifacts in workflow execution by @samrooke in #470
• Tests for exporting a folder by @RemakingEden in #475
• AC-568-add-acknowledge-date-to-filter-out-previous-acknowledged-errors-monai by @lillie-dae in #474
• Tests for mandatory output issue by @RemakingEden in #481

Docker Images

docker pull ghcr.io/project-monai/monai-deploy-workflow-manager:0.1.0

docker pull ghcr.io/project-monai/monai-deploy-task-manager:0.1.0

New Contributors

• @mocsharp made their first contribution in #4
• @joshliberty made their first contribution in #38
• @dbericat made their first contribution in #45
• @JossSparkesAnswer made their first contribution in #74
• @jackschofield23 made their first contribution in #88
• @SN-Codevio made their first contribution in #111
• @Dusty-Meg made their first contribution in #126
• @lillie-dae made their first contribution in #121
• @DuncanSangster made their first contribution in #172
• @JJFinnerty made their first contribution in #209
• @neildsouth made their first contribution in #219
• @pritishnahar95 made their first contribution in #398
• @samrooke made their first contribution in #420

Full Changelog: https://github.com/Project-MONAI/monai-deploy-workflow-manager/commits/0.1.0